Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.24■□□□□ 0.03
MSH3P20585 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.24■□□□□ 0.03
MSH3P20585 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.24■□□□□ 0.03
MSH3P20585 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
MSH3P20585 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.24■□□□□ 0.03
MSH3P20585 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.24■□□□□ 0.03
MSH3P20585 AP005018.1-201ENST00000525475 301 ntBASIC15.24■□□□□ 0.03
MSH3P20585 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.24■□□□□ 0.03
MSH3P20585 ENPP7P5-201ENST00000541031 1031 ntBASIC15.24■□□□□ 0.03
MSH3P20585 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.24■□□□□ 0.03
MSH3P20585 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.24■□□□□ 0.03
MSH3P20585 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.24■□□□□ 0.03
MSH3P20585 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.24■□□□□ 0.03
MSH3P20585 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.24■□□□□ 0.03
MSH3P20585 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
MSH3P20585 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.24■□□□□ 0.03
MSH3P20585 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.24■□□□□ 0.03
MSH3P20585 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.24■□□□□ 0.03
MSH3P20585 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.23■□□□□ 0.03
MSH3P20585 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
MSH3P20585 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 GHSR-202ENST00000427970 912 ntBASIC15.23■□□□□ 0.03
MSH3P20585 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.23■□□□□ 0.03
MSH3P20585 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.23■□□□□ 0.03
MSH3P20585 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.23■□□□□ 0.03
MSH3P20585 AP001582.1-201ENST00000525856 295 ntBASIC15.23■□□□□ 0.03
MSH3P20585 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 AL596325.1-201ENST00000563991 1082 ntBASIC15.23■□□□□ 0.03
MSH3P20585 SAMD11P1-201ENST00000571429 661 ntBASIC15.23■□□□□ 0.03
MSH3P20585 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.23■□□□□ 0.03
MSH3P20585 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.23■□□□□ 0.03
MSH3P20585 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
MSH3P20585 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
MSH3P20585 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms