Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 IRF8-202ENST00000562492 946 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 MTDHP3-201ENST00000594186 672 ntBASIC11.56□□□□□ -0.56
HLA-DQA1P01909 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 AL589182.2-201ENST00000619332 1049 ntBASIC11.56□□□□□ -0.56
HLA-DQA1P01909 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 AMT-224ENST00000635808 1610 ntTSL 5 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 AC138969.3-201ENST00000546612 1459 ntBASIC11.56□□□□□ -0.56
HLA-DQA1P01909 AC138932.2-201ENST00000548268 1459 ntBASIC11.56□□□□□ -0.56
HLA-DQA1P01909 AC126755.4-201ENST00000549796 1459 ntBASIC11.56□□□□□ -0.56
HLA-DQA1P01909 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 SON-203ENST00000381679 7860 ntTSL 5 BASIC11.56□□□□□ -0.56
HLA-DQA1P01909 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 Z82170.1-201ENST00000625081 3192 ntBASIC11.55□□□□□ -0.56
HLA-DQA1P01909 FP325330.2-201ENST00000624219 5630 ntBASIC11.55□□□□□ -0.56
HLA-DQA1P01909 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 KRT8P22-201ENST00000562317 1415 ntBASIC11.55□□□□□ -0.56
HLA-DQA1P01909 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 RBM17P3-201ENST00000417687 1192 ntBASIC11.55□□□□□ -0.56
HLA-DQA1P01909 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 MIR3909-201ENST00000579518 119 ntBASIC11.55□□□□□ -0.56
HLA-DQA1P01909 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC11.55□□□□□ -0.56
HLA-DQA1P01909 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DQA1P01909 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC11.54□□□□□ -0.56
HLA-DQA1P01909 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DQA1P01909 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DQA1P01909 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC11.54□□□□□ -0.56
HLA-DQA1P01909 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DQA1P01909 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC11.54□□□□□ -0.56
HLA-DQA1P01909 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DQA1P01909 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC11.54□□□□□ -0.56
HLA-DQA1P01909 KRT8P24-201ENST00000560290 1559 ntBASIC11.54□□□□□ -0.56
HLA-DQA1P01909 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms