Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 GDNF-207ENST00000515058 764 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP4O75161 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP4O75161 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC20.86■□□□□ 0.93
NPHP4O75161 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
NPHP4O75161 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC20.86■□□□□ 0.93
NPHP4O75161 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 AC007292.2-201ENST00000593524 1812 ntBASIC20.85■□□□□ 0.93
NPHP4O75161 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 FTX-216ENST00000638985 1367 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP4O75161 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.85■□□□□ 0.93
NPHP4O75161 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
NPHP4O75161 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC20.85■□□□□ 0.93
NPHP4O75161 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
NPHP4O75161 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 KRT18P46-201ENST00000435568 1279 ntBASIC20.85■□□□□ 0.93
NPHP4O75161 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP4O75161 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 RN7SL23P-201ENST00000484055 275 ntBASIC20.85■□□□□ 0.93
NPHP4O75161 AC083801.1-201ENST00000491689 358 ntBASIC20.85■□□□□ 0.93
NPHP4O75161 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP4O75161 AC226150.1-201ENST00000544259 466 ntBASIC20.85■□□□□ 0.93
NPHP4O75161 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP4O75161 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC20.85■□□□□ 0.93
NPHP4O75161 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP4O75161 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP4O75161 AC006483.2-201ENST00000609813 515 ntBASIC20.85■□□□□ 0.93
NPHP4O75161 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP4O75161 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP4O75161 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP4O75161 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 API5-208ENST00000531273 1868 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP4O75161 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP4O75161 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP4O75161 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP4O75161 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
NPHP4O75161 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP4O75161 AC009090.5-201ENST00000624886 2285 ntBASIC20.84■□□□□ 0.93
NPHP4O75161 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
NPHP4O75161 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
NPHP4O75161 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC20.84■□□□□ 0.93
NPHP4O75161 CELP-201ENST00000411440 1249 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP4O75161 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP4O75161 ACTG1P19-201ENST00000418987 1116 ntBASIC20.84■□□□□ 0.93
NPHP4O75161 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC20.84■□□□□ 0.93
NPHP4O75161 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 GNG10P1-201ENST00000452289 199 ntBASIC20.84■□□□□ 0.93
NPHP4O75161 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC20.84■□□□□ 0.93
NPHP4O75161 RPL18AP8-201ENST00000486071 528 ntBASIC20.84■□□□□ 0.93
NPHP4O75161 IGHEP1-201ENST00000521393 651 ntBASIC20.84■□□□□ 0.93
NPHP4O75161 OR5BD1P-201ENST00000532527 817 ntBASIC20.84■□□□□ 0.93
NPHP4O75161 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC20.84■□□□□ 0.93
NPHP4O75161 AC010976.2-201ENST00000609697 852 ntBASIC20.84■□□□□ 0.93
NPHP4O75161 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
NPHP4O75161 MIR6746-201ENST00000620971 63 ntBASIC20.84■□□□□ 0.93
NPHP4O75161 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC20.84■□□□□ 0.93
NPHP4O75161 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC20.84■□□□□ 0.93
NPHP4O75161 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP4O75161 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
NPHP4O75161 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
NPHP4O75161 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
NPHP4O75161 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.83■□□□□ 0.93
NPHP4O75161 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP4O75161 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP4O75161 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC20.83■□□□□ 0.93
NPHP4O75161 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC20.83■□□□□ 0.93
NPHP4O75161 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP4O75161 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP4O75161 MIR645-201ENST00000385283 94 ntBASIC20.83■□□□□ 0.93
NPHP4O75161 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP4O75161 HNRNPA1P27-201ENST00000412087 955 ntBASIC20.83■□□□□ 0.93
NPHP4O75161 AC073869.2-201ENST00000417338 1026 ntBASIC20.83■□□□□ 0.93
NPHP4O75161 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC20.83■□□□□ 0.93
NPHP4O75161 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC20.83■□□□□ 0.93
NPHP4O75161 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC20.83■□□□□ 0.93
NPHP4O75161 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPHP4O75161 RGS5-216ENST00000449680 788 ntTSL 3 BASIC20.83■□□□□ 0.93
NPHP4O75161 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC20.83■□□□□ 0.93
NPHP4O75161 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC20.83■□□□□ 0.93
NPHP4O75161 USB1-205ENST00000561743 1135 ntTSL 3 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms