Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
LDB3O75112 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 COX5BP8-201ENST00000416911 349 ntBASIC14.38□□□□□ -0.11
LDB3O75112 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.38□□□□□ -0.11
LDB3O75112 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.38□□□□□ -0.11
LDB3O75112 AC005225.4-201ENST00000557330 545 ntBASIC14.38□□□□□ -0.11
LDB3O75112 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.38□□□□□ -0.11
LDB3O75112 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.38□□□□□ -0.11
LDB3O75112 RPSAP52-203ENST00000622976 1023 ntBASIC14.38□□□□□ -0.11
LDB3O75112 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 CU639417.3-201ENST00000624240 1404 ntBASIC14.38□□□□□ -0.11
LDB3O75112 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.38□□□□□ -0.11
LDB3O75112 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
LDB3O75112 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LDB3O75112 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.38□□□□□ -0.11
LDB3O75112 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
LDB3O75112 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.37□□□□□ -0.11
LDB3O75112 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
LDB3O75112 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
LDB3O75112 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 NME2P1-201ENST00000426182 414 ntBASIC14.37□□□□□ -0.11
LDB3O75112 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.37□□□□□ -0.11
LDB3O75112 AC093433.1-201ENST00000458048 571 ntBASIC14.37□□□□□ -0.11
LDB3O75112 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.37□□□□□ -0.11
LDB3O75112 TDH-203ENST00000531764 1110 ntBASIC14.37□□□□□ -0.11
LDB3O75112 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
LDB3O75112 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 AP001063.1-201ENST00000568332 529 ntBASIC14.37□□□□□ -0.11
LDB3O75112 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.37□□□□□ -0.11
LDB3O75112 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.37□□□□□ -0.11
LDB3O75112 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 AC012645.4-201ENST00000610691 1061 ntBASIC14.37□□□□□ -0.11
LDB3O75112 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.37□□□□□ -0.11
LDB3O75112 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LDB3O75112 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
LDB3O75112 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.37□□□□□ -0.11
LDB3O75112 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.37□□□□□ -0.11
LDB3O75112 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LDB3O75112 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms