Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CHMP2AO43633 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP2AO43633 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP2AO43633 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC17.18■□□□□ 0.34
CHMP2AO43633 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP2AO43633 AC144831.1-201ENST00000573312 2656 ntBASIC17.18■□□□□ 0.34
CHMP2AO43633 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP2AO43633 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CHMP2AO43633 AC046158.3-201ENST00000624947 2558 ntBASIC17.18■□□□□ 0.34
CHMP2AO43633 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC17.18■□□□□ 0.34
CHMP2AO43633 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.18■□□□□ 0.34
CHMP2AO43633 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP2AO43633 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.18■□□□□ 0.34
CHMP2AO43633 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC17.17■□□□□ 0.34
CHMP2AO43633 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CHMP2AO43633 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.17■□□□□ 0.34
CHMP2AO43633 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CHMP2AO43633 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.17■□□□□ 0.34
CHMP2AO43633 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CHMP2AO43633 AL109954.1-202ENST00000564051 2148 ntBASIC17.17■□□□□ 0.34
CHMP2AO43633 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.17■□□□□ 0.34
CHMP2AO43633 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 AC092384.3-202ENST00000564646 2873 ntBASIC17.17■□□□□ 0.34
CHMP2AO43633 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 AC104457.1-201ENST00000401024 814 ntBASIC17.17■□□□□ 0.34
CHMP2AO43633 ACTBP8-201ENST00000403258 1108 ntBASIC17.17■□□□□ 0.34
CHMP2AO43633 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.17■□□□□ 0.34
CHMP2AO43633 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.17■□□□□ 0.34
CHMP2AO43633 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CHMP2AO43633 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.17■□□□□ 0.34
CHMP2AO43633 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.17■□□□□ 0.34
CHMP2AO43633 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.17■□□□□ 0.34
CHMP2AO43633 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 PRSS30P-206ENST00000641773 873 ntBASIC17.17■□□□□ 0.34
CHMP2AO43633 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.17■□□□□ 0.34
CHMP2AO43633 AP000845.1-201ENST00000581677 2131 ntBASIC17.17■□□□□ 0.34
CHMP2AO43633 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
CHMP2AO43633 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP2AO43633 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CHMP2AO43633 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.16■□□□□ 0.34
CHMP2AO43633 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.16■□□□□ 0.34
CHMP2AO43633 HLA-K-203ENST00000430151 1046 ntBASIC17.16■□□□□ 0.34
CHMP2AO43633 C2orf27AP3-201ENST00000434123 579 ntBASIC17.16■□□□□ 0.34
CHMP2AO43633 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.16■□□□□ 0.34
CHMP2AO43633 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.16■□□□□ 0.34
CHMP2AO43633 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CHMP2AO43633 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
CHMP2AO43633 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.16■□□□□ 0.34
CHMP2AO43633 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CHMP2AO43633 MIR4259-201ENST00000584466 101 ntBASIC17.16■□□□□ 0.34
CHMP2AO43633 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.16■□□□□ 0.34
CHMP2AO43633 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.16■□□□□ 0.34
CHMP2AO43633 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 MIR6805-201ENST00000615055 62 ntBASIC17.16■□□□□ 0.34
CHMP2AO43633 AL354718.3-201ENST00000616414 581 ntBASIC17.16■□□□□ 0.34
CHMP2AO43633 CR382287.1-201ENST00000623954 586 ntBASIC17.16■□□□□ 0.34
CHMP2AO43633 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.16■□□□□ 0.34
CHMP2AO43633 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CHMP2AO43633 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CHMP2AO43633 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP2AO43633 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms