Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 MIR574-201ENST00000385209 96 ntBASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 AC015922.1-201ENST00000421102 1152 ntBASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 MIR6080-201ENST00000617359 66 ntBASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
TRIM49D1C9J1S8 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AC136759.1-202ENST00000530858 2194 ntBASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AL121723.1-201ENST00000445194 1519 ntBASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AL080243.2-201ENST00000418783 582 ntBASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 RPL13P2-201ENST00000440687 659 ntBASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 LINC01115-203ENST00000606068 577 ntBASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AL033527.5-202ENST00000641632 1098 ntBASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AL928921.2-201ENST00000641325 2442 ntBASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
TRIM49D1C9J1S8 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM49D1C9J1S8 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms