Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AC105020.1-201ENST00000435356 2205 ntBASIC11.55□□□□□ -0.56
COL6A5A8TX70 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 KRT18P36-201ENST00000411618 1276 ntBASIC11.55□□□□□ -0.56
COL6A5A8TX70 RN7SL23P-201ENST00000484055 275 ntBASIC11.55□□□□□ -0.56
COL6A5A8TX70 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AC006058.4-201ENST00000624016 1670 ntBASIC11.55□□□□□ -0.56
COL6A5A8TX70 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 BANP-227ENST00000626016 2144 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AL157407.1-201ENST00000435784 904 ntBASIC11.55□□□□□ -0.56
COL6A5A8TX70 SKA2-202ENST00000437036 625 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AL356000.1-201ENST00000441073 1238 ntBASIC11.55□□□□□ -0.56
COL6A5A8TX70 TPT1P6-201ENST00000458298 514 ntBASIC11.55□□□□□ -0.56
COL6A5A8TX70 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 ALG3P1-201ENST00000508806 1114 ntBASIC11.55□□□□□ -0.56
COL6A5A8TX70 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 AC010976.2-201ENST00000609697 852 ntBASIC11.55□□□□□ -0.56
COL6A5A8TX70 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 TMA16-204ENST00000508268 608 ntTSL 2 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 CD164-210ENST00000512821 964 ntTSL 2 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 NAT9-219ENST00000582524 573 ntTSL 4 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 CYP4F23P-201ENST00000593402 1579 ntBASIC11.54□□□□□ -0.56
COL6A5A8TX70 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 RHOQP2-201ENST00000449922 579 ntBASIC11.54□□□□□ -0.56
COL6A5A8TX70 AC026412.1-206ENST00000502273 206 ntBASIC11.54□□□□□ -0.56
COL6A5A8TX70 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 AC022966.2-201ENST00000587434 367 ntBASIC11.54□□□□□ -0.56
COL6A5A8TX70 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC11.54□□□□□ -0.56
COL6A5A8TX70 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
COL6A5A8TX70 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms