Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 TTTY23B-201ENST00000442790 549 ntBASIC14.9□□□□□ -0.02
VPS4AQ9UN37 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 AC097359.3-201ENST00000603982 1210 ntBASIC14.9□□□□□ -0.02
VPS4AQ9UN37 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 AC007431.3-201ENST00000623221 587 ntBASIC14.9□□□□□ -0.02
VPS4AQ9UN37 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4AQ9UN37 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 AP005482.1-201ENST00000563722 1273 ntBASIC14.89□□□□□ -0.03
VPS4AQ9UN37 MIR4525-201ENST00000580000 75 ntBASIC14.89□□□□□ -0.03
VPS4AQ9UN37 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms