Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC007326.2-201ENST00000624224 7579 ntBASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 TUBB3P1-201ENST00000405796 1332 ntBASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 AL139400.1-201ENST00000366220 510 ntBASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 AL645939.2-201ENST00000427340 991 ntBASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 Z92544.3-201ENST00000624747 417 ntBASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC39Q9UFE4 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 AP001160.2-201ENST00000596071 487 ntBASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC39Q9UFE4 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC39Q9UFE4 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms