Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
AMBRA1Q9C0C7 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 PCDHA3-202ENST00000532566 4594 ntBASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 CNN2P2-201ENST00000443536 909 ntBASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 CNN2P3-201ENST00000450201 906 ntBASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 AC067863.1-201ENST00000494933 530 ntBASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 RN7SL828P-201ENST00000607615 303 ntBASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 AC003101.2-201ENST00000612557 442 ntBASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 AL136317.3-201ENST00000618497 906 ntBASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.35□□□□□ -0.11
AMBRA1Q9C0C7 KRT8P12-202ENST00000472924 1397 ntBASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 AL161772.1-201ENST00000610494 4412 ntBASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms