Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MIR4472-1-201ENST00000584349 80 ntBASIC14.72□□□□□ -0.05
VPS13AQ96RL7 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 AC006058.4-201ENST00000624016 1670 ntBASIC14.72□□□□□ -0.05
VPS13AQ96RL7 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 IGHEP1-201ENST00000521393 651 ntBASIC14.72□□□□□ -0.05
VPS13AQ96RL7 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 AC084364.1-201ENST00000551967 1556 ntBASIC14.72□□□□□ -0.05
VPS13AQ96RL7 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.72□□□□□ -0.05
VPS13AQ96RL7 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 BAK1P1-201ENST00000317045 636 ntBASIC14.71□□□□□ -0.05
VPS13AQ96RL7 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 AL512306.1-201ENST00000432698 848 ntBASIC14.71□□□□□ -0.05
VPS13AQ96RL7 CHCHD2P9-201ENST00000461726 456 ntBASIC14.71□□□□□ -0.05
VPS13AQ96RL7 ORAOV1P1-201ENST00000503108 395 ntBASIC14.71□□□□□ -0.05
VPS13AQ96RL7 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 AC007952.4-201ENST00000573866 637 ntBASIC14.71□□□□□ -0.05
VPS13AQ96RL7 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 HLA-K-203ENST00000430151 1046 ntBASIC14.71□□□□□ -0.05
VPS13AQ96RL7 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 RN7SL81P-201ENST00000493781 261 ntBASIC14.71□□□□□ -0.05
VPS13AQ96RL7 BCL2L12P1-201ENST00000508390 733 ntBASIC14.71□□□□□ -0.05
VPS13AQ96RL7 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.71□□□□□ -0.05
VPS13AQ96RL7 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS13AQ96RL7 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.71□□□□□ -0.06
VPS13AQ96RL7 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.71□□□□□ -0.06
VPS13AQ96RL7 AC108724.1-201ENST00000481669 352 ntBASIC14.71□□□□□ -0.06
VPS13AQ96RL7 AC068867.1-201ENST00000559855 150 ntBASIC14.71□□□□□ -0.06
VPS13AQ96RL7 AC011462.4-201ENST00000616866 449 ntBASIC14.71□□□□□ -0.06
VPS13AQ96RL7 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 AC106047.2-201ENST00000511723 743 ntBASIC14.7□□□□□ -0.06
VPS13AQ96RL7 AP005212.2-201ENST00000584979 510 ntBASIC14.7□□□□□ -0.06
VPS13AQ96RL7 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 AC008741.2-201ENST00000612792 3115 ntBASIC14.7□□□□□ -0.06
VPS13AQ96RL7 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 AC087392.5-201ENST00000612517 489 ntBASIC14.7□□□□□ -0.06
VPS13AQ96RL7 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms