Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 AC093525.8-201ENST00000624099 1342 ntBASIC14.25□□□□□ -0.13
BEST3Q8N1M1 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ACKR1-201ENST00000368121 1240 ntBASIC14.25□□□□□ -0.13
BEST3Q8N1M1 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 AC025181.2-201ENST00000606994 802 ntBASIC14.25□□□□□ -0.13
BEST3Q8N1M1 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 OR2I1P-210ENST00000642037 4691 ntBASIC14.25□□□□□ -0.13
BEST3Q8N1M1 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
BEST3Q8N1M1 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 AC016694.1-201ENST00000434179 700 ntBASIC14.24□□□□□ -0.13
BEST3Q8N1M1 RPL7P3-201ENST00000441388 714 ntBASIC14.24□□□□□ -0.13
BEST3Q8N1M1 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 AC244669.2-201ENST00000612320 853 ntBASIC14.24□□□□□ -0.13
BEST3Q8N1M1 AL033527.4-201ENST00000641026 673 ntBASIC14.24□□□□□ -0.13
BEST3Q8N1M1 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
BEST3Q8N1M1 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 AC099336.1-201ENST00000417053 1171 ntBASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms