Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 AL133267.1-201ENST00000398220 340 ntBASIC16.65■□□□□ 0.26
VPS52Q8N1B4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 BCYRN1-201ENST00000418539 200 ntBASIC16.65■□□□□ 0.26
VPS52Q8N1B4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 AC099548.2-209ENST00000480264 625 ntBASIC16.65■□□□□ 0.26
VPS52Q8N1B4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 RN7SL560P-201ENST00000577943 264 ntBASIC16.65■□□□□ 0.26
VPS52Q8N1B4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 AC008687.7-202ENST00000637404 953 ntBASIC16.65■□□□□ 0.26
VPS52Q8N1B4 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS52Q8N1B4 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VPS52Q8N1B4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 AC015910.1-201ENST00000579400 975 ntBASIC16.64■□□□□ 0.25
VPS52Q8N1B4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS52Q8N1B4 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 CNN2P8-201ENST00000421872 913 ntBASIC16.63■□□□□ 0.25
VPS52Q8N1B4 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 DUX4L45-201ENST00000566406 1057 ntBASIC16.63■□□□□ 0.25
VPS52Q8N1B4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 AC103810.3-201ENST00000583567 96 ntBASIC16.63■□□□□ 0.25
VPS52Q8N1B4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms