Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 AL606495.2-201ENST00000605867 535 ntBASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 PRSS30P-206ENST00000641773 873 ntBASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 FLJ16779-201ENST00000612722 7638 ntBASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SCUBE3Q8IX30 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 AC067930.6-201ENST00000623257 4947 ntBASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
SCUBE3Q8IX30 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 ZBED1P1-201ENST00000502364 1930 ntBASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 AL645937.2-201ENST00000396808 931 ntBASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 AL512384.1-201ENST00000406683 331 ntBASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 NUS1P3-201ENST00000423502 862 ntBASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 ACTG1P3-201ENST00000431775 1114 ntBASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SCUBE3Q8IX30 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SCUBE3Q8IX30 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms