Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC14.04□□□□□ -0.16
USP43Q70EL4 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 ACE3P-201ENST00000423435 1973 ntBASIC14.04□□□□□ -0.16
USP43Q70EL4 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
USP43Q70EL4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.04□□□□□ -0.16
USP43Q70EL4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.04□□□□□ -0.16
USP43Q70EL4 AP000344.2-201ENST00000512987 629 ntBASIC14.04□□□□□ -0.16
USP43Q70EL4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.04□□□□□ -0.16
USP43Q70EL4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.04□□□□□ -0.16
USP43Q70EL4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.04□□□□□ -0.16
USP43Q70EL4 MIR4313-201ENST00000580760 101 ntBASIC14.04□□□□□ -0.16
USP43Q70EL4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.04□□□□□ -0.16
USP43Q70EL4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.04□□□□□ -0.16
USP43Q70EL4 AC004790.2-201ENST00000623588 572 ntBASIC14.04□□□□□ -0.16
USP43Q70EL4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 AC097359.2-201ENST00000604992 2389 ntBASIC14.04□□□□□ -0.16
USP43Q70EL4 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.04□□□□□ -0.16
USP43Q70EL4 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.04□□□□□ -0.16
USP43Q70EL4 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.04□□□□□ -0.16
USP43Q70EL4 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
USP43Q70EL4 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.04□□□□□ -0.16
USP43Q70EL4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
USP43Q70EL4 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
USP43Q70EL4 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.03□□□□□ -0.16
USP43Q70EL4 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
USP43Q70EL4 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.03□□□□□ -0.16
USP43Q70EL4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.03□□□□□ -0.16
USP43Q70EL4 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.03□□□□□ -0.16
USP43Q70EL4 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USP43Q70EL4 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.03□□□□□ -0.16
USP43Q70EL4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC14.03□□□□□ -0.16
USP43Q70EL4 AC018845.2-201ENST00000568326 409 ntBASIC14.03□□□□□ -0.16
USP43Q70EL4 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
USP43Q70EL4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
USP43Q70EL4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.03□□□□□ -0.16
USP43Q70EL4 MIR4321-201ENST00000592276 80 ntBASIC14.03□□□□□ -0.16
USP43Q70EL4 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms