Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC12.4□□□□□ -0.42
VPS13CQ709C8 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
VPS13CQ709C8 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC12.4□□□□□ -0.42
VPS13CQ709C8 AC127383.1-201ENST00000444697 1800 ntBASIC12.4□□□□□ -0.42
VPS13CQ709C8 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
VPS13CQ709C8 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC12.4□□□□□ -0.42
VPS13CQ709C8 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
VPS13CQ709C8 RAN-210ENST00000541630 1475 ntTSL 2 BASIC12.4□□□□□ -0.42
VPS13CQ709C8 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
VPS13CQ709C8 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
VPS13CQ709C8 AC006122.1-201ENST00000493323 440 ntBASIC12.4□□□□□ -0.42
VPS13CQ709C8 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC12.4□□□□□ -0.42
VPS13CQ709C8 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
VPS13CQ709C8 AC138466.5-201ENST00000624002 808 ntBASIC12.4□□□□□ -0.42
VPS13CQ709C8 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
VPS13CQ709C8 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.4□□□□□ -0.42
VPS13CQ709C8 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
VPS13CQ709C8 FAS-202ENST00000352159 1722 ntTSL 5 BASIC12.4□□□□□ -0.42
VPS13CQ709C8 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
VPS13CQ709C8 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
VPS13CQ709C8 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
VPS13CQ709C8 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
VPS13CQ709C8 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
VPS13CQ709C8 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 AC011247.3-201ENST00000603297 438 ntBASIC12.4□□□□□ -0.43
VPS13CQ709C8 RNF146-211ENST00000609447 607 ntTSL 4 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.4□□□□□ -0.43
VPS13CQ709C8 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 STK26-204ENST00000481105 1835 ntTSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC12.39□□□□□ -0.43
VPS13CQ709C8 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
VPS13CQ709C8 AL135901.1-201ENST00000451812 333 ntBASIC12.39□□□□□ -0.43
VPS13CQ709C8 AL645728.2-202ENST00000641679 227 ntBASIC12.39□□□□□ -0.43
VPS13CQ709C8 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC12.38□□□□□ -0.43
VPS13CQ709C8 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
VPS13CQ709C8 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.38□□□□□ -0.43
VPS13CQ709C8 HLA-K-203ENST00000430151 1046 ntBASIC12.38□□□□□ -0.43
VPS13CQ709C8 AL512306.1-201ENST00000432698 848 ntBASIC12.38□□□□□ -0.43
VPS13CQ709C8 POLD4-208ENST00000532830 904 ntTSL 3 BASIC12.38□□□□□ -0.43
VPS13CQ709C8 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.38□□□□□ -0.43
VPS13CQ709C8 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
VPS13CQ709C8 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
VPS13CQ709C8 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 KRT18P9-201ENST00000604826 1300 ntBASIC12.38□□□□□ -0.43
VPS13CQ709C8 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
VPS13CQ709C8 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms