Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.2■□□□□ 0.18
LIG3P49916 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.2■□□□□ 0.18
LIG3P49916 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 AC241585.1-201ENST00000433527 519 ntBASIC16.2■□□□□ 0.18
LIG3P49916 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.2■□□□□ 0.18
LIG3P49916 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.2■□□□□ 0.18
LIG3P49916 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.2■□□□□ 0.18
LIG3P49916 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 AC099521.3-201ENST00000624251 2938 ntBASIC16.2■□□□□ 0.18
LIG3P49916 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
LIG3P49916 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
LIG3P49916 AL356585.2-201ENST00000625078 2396 ntBASIC16.2■□□□□ 0.18
LIG3P49916 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LIG3P49916 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIG3P49916 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 AC100757.3-201ENST00000622361 1406 ntBASIC16.19■□□□□ 0.18
LIG3P49916 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
LIG3P49916 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LIG3P49916 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
LIG3P49916 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.19■□□□□ 0.18
LIG3P49916 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.19■□□□□ 0.18
LIG3P49916 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.19■□□□□ 0.18
LIG3P49916 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 FAM8A3P-201ENST00000427218 844 ntBASIC16.19■□□□□ 0.18
LIG3P49916 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
LIG3P49916 AL512638.1-201ENST00000457493 794 ntBASIC16.19■□□□□ 0.18
LIG3P49916 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.19■□□□□ 0.18
LIG3P49916 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.19■□□□□ 0.18
LIG3P49916 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.19■□□□□ 0.18
LIG3P49916 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
LIG3P49916 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
LIG3P49916 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.19■□□□□ 0.18
LIG3P49916 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC16.19■□□□□ 0.18
LIG3P49916 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC16.19■□□□□ 0.18
LIG3P49916 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LIG3P49916 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
LIG3P49916 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LIG3P49916 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIG3P49916 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.18■□□□□ 0.18
LIG3P49916 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
LIG3P49916 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIG3P49916 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.18■□□□□ 0.18
LIG3P49916 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 RPL37AP1-201ENST00000412502 279 ntBASIC16.18■□□□□ 0.18
LIG3P49916 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.18■□□□□ 0.18
LIG3P49916 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.18■□□□□ 0.18
LIG3P49916 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.18■□□□□ 0.18
LIG3P49916 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.18■□□□□ 0.18
LIG3P49916 AL079307.3-201ENST00000556114 283 ntBASIC16.18■□□□□ 0.18
LIG3P49916 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms