Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
NKX2-1P43699 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 FOXO1B-201ENST00000504678 1527 ntBASIC12.59□□□□□ -0.39
NKX2-1P43699 MBLAC2-202ENST00000514906 1936 ntBASIC12.59□□□□□ -0.39
NKX2-1P43699 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 CRCP-205ENST00000431089 942 ntTSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.59□□□□□ -0.39
NKX2-1P43699 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC12.59□□□□□ -0.39
NKX2-1P43699 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 AL662844.1-201ENST00000546340 181 ntBASIC12.59□□□□□ -0.39
NKX2-1P43699 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 AC104692.2-201ENST00000603054 253 ntBASIC12.59□□□□□ -0.39
NKX2-1P43699 PRKN-208ENST00000610470 531 ntTSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 PRKN-209ENST00000612485 225 ntTSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 AQP6-205ENST00000618286 829 ntTSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC12.59□□□□□ -0.39
NKX2-1P43699 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 BSG-215ENST00000618006 1329 ntTSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
NKX2-1P43699 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
NKX2-1P43699 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
NKX2-1P43699 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.58□□□□□ -0.39
NKX2-1P43699 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
NKX2-1P43699 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.58□□□□□ -0.39
NKX2-1P43699 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
NKX2-1P43699 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC12.58□□□□□ -0.4
NKX2-1P43699 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 AL031284.1-201ENST00000419297 478 ntBASIC12.58□□□□□ -0.4
NKX2-1P43699 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC12.58□□□□□ -0.4
NKX2-1P43699 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.58□□□□□ -0.4
NKX2-1P43699 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 AC015802.1-201ENST00000588104 1449 ntBASIC12.58□□□□□ -0.4
NKX2-1P43699 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC12.58□□□□□ -0.4
NKX2-1P43699 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.58□□□□□ -0.4
NKX2-1P43699 AC025580.3-201ENST00000617932 1424 ntBASIC12.58□□□□□ -0.4
NKX2-1P43699 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.58□□□□□ -0.4
NKX2-1P43699 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
NKX2-1P43699 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.58□□□□□ -0.4
NKX2-1P43699 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
NKX2-1P43699 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms