Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.02■□□□□ -0
SHMT2P34897 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.02■□□□□ -0
SHMT2P34897 ENPP7P5-201ENST00000541031 1031 ntBASIC15.02■□□□□ -0
SHMT2P34897 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.02■□□□□ -0
SHMT2P34897 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.02■□□□□ -0
SHMT2P34897 AC124283.3-201ENST00000570869 594 ntBASIC15.02■□□□□ -0
SHMT2P34897 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.02■□□□□ -0
SHMT2P34897 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.02■□□□□ -0
SHMT2P34897 AC107373.2-201ENST00000607735 490 ntBASIC15.02■□□□□ -0
SHMT2P34897 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.02■□□□□ -0
SHMT2P34897 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.02■□□□□ -0
SHMT2P34897 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHMT2P34897 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.02□□□□□ -0.01
SHMT2P34897 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.02□□□□□ -0.01
SHMT2P34897 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
SHMT2P34897 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SHMT2P34897 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
SHMT2P34897 LINC00552-201ENST00000625151 2579 ntBASIC15.02□□□□□ -0.01
SHMT2P34897 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SHMT2P34897 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.02□□□□□ -0.01
SHMT2P34897 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHMT2P34897 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.02□□□□□ -0.01
SHMT2P34897 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHMT2P34897 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SHMT2P34897 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.02□□□□□ -0.01
SHMT2P34897 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
SHMT2P34897 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.02□□□□□ -0.01
SHMT2P34897 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.01□□□□□ -0.01
SHMT2P34897 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
SHMT2P34897 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SHMT2P34897 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
SHMT2P34897 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.01□□□□□ -0.01
SHMT2P34897 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.01□□□□□ -0.01
SHMT2P34897 GAPDHP21-201ENST00000450301 1010 ntBASIC15.01□□□□□ -0.01
SHMT2P34897 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.01□□□□□ -0.01
SHMT2P34897 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.01□□□□□ -0.01
SHMT2P34897 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.01□□□□□ -0.01
SHMT2P34897 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.01□□□□□ -0.01
SHMT2P34897 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SHMT2P34897 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
SHMT2P34897 CU634019.7-201ENST00000624153 1185 ntBASIC15.01□□□□□ -0.01
SHMT2P34897 FP236241.2-201ENST00000624906 1185 ntBASIC15.01□□□□□ -0.01
SHMT2P34897 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.01□□□□□ -0.01
SHMT2P34897 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.01□□□□□ -0.01
SHMT2P34897 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
SHMT2P34897 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.01□□□□□ -0.01
SHMT2P34897 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.01□□□□□ -0.01
SHMT2P34897 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.01□□□□□ -0.01
SHMT2P34897 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
SHMT2P34897 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHMT2P34897 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.01□□□□□ -0.01
SHMT2P34897 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15□□□□□ -0.01
SHMT2P34897 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
SHMT2P34897 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 AC009090.5-201ENST00000624886 2285 ntBASIC15□□□□□ -0.01
SHMT2P34897 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15□□□□□ -0.01
SHMT2P34897 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15□□□□□ -0.01
SHMT2P34897 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15□□□□□ -0.01
SHMT2P34897 AL512384.1-201ENST00000406683 331 ntBASIC15□□□□□ -0.01
SHMT2P34897 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 AC005034.1-201ENST00000426657 489 ntBASIC15□□□□□ -0.01
SHMT2P34897 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 INE1-201ENST00000456273 945 ntBASIC15□□□□□ -0.01
SHMT2P34897 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 GAPDHP40-201ENST00000505218 1006 ntBASIC15□□□□□ -0.01
SHMT2P34897 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15□□□□□ -0.01
SHMT2P34897 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
SHMT2P34897 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms