Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXC4P09017 AC103810.3-201ENST00000583567 96 ntBASIC14.78□□□□□ -0.04
HOXC4P09017 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXC4P09017 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXC4P09017 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXC4P09017 AC002472.3-201ENST00000640124 621 ntBASIC14.78□□□□□ -0.04
HOXC4P09017 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXC4P09017 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HOXC4P09017 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HOXC4P09017 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.78□□□□□ -0.04
HOXC4P09017 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HOXC4P09017 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXC4P09017 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HOXC4P09017 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXC4P09017 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXC4P09017 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXC4P09017 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
HOXC4P09017 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 AL359258.3-201ENST00000622910 2331 ntBASIC14.77□□□□□ -0.04
HOXC4P09017 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 AC011840.2-201ENST00000563063 1520 ntBASIC14.77□□□□□ -0.04
HOXC4P09017 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 AC003102.2-201ENST00000589195 1469 ntBASIC14.77□□□□□ -0.04
HOXC4P09017 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.77□□□□□ -0.04
HOXC4P09017 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
HOXC4P09017 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.77□□□□□ -0.04
HOXC4P09017 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
HOXC4P09017 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HOXC4P09017 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
HOXC4P09017 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.77□□□□□ -0.05
HOXC4P09017 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXC4P09017 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.77□□□□□ -0.05
HOXC4P09017 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC14.77□□□□□ -0.05
HOXC4P09017 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.77□□□□□ -0.05
HOXC4P09017 AL358472.3-201ENST00000608147 415 ntBASIC14.77□□□□□ -0.05
HOXC4P09017 BX088702.1-201ENST00000610784 235 ntBASIC14.77□□□□□ -0.05
HOXC4P09017 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.77□□□□□ -0.05
HOXC4P09017 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXC4P09017 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HOXC4P09017 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
HOXC4P09017 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
HOXC4P09017 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.77□□□□□ -0.05
HOXC4P09017 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.77□□□□□ -0.05
HOXC4P09017 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HOXC4P09017 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
HOXC4P09017 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HOXC4P09017 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HOXC4P09017 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HOXC4P09017 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.76□□□□□ -0.05
HOXC4P09017 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.76□□□□□ -0.05
HOXC4P09017 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms