Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
APOEP02649 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.07■□□□□ 0.16
APOEP02649 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.07■□□□□ 0.16
APOEP02649 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.07■□□□□ 0.16
APOEP02649 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.07■□□□□ 0.16
APOEP02649 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
APOEP02649 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.07■□□□□ 0.16
APOEP02649 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.07■□□□□ 0.16
APOEP02649 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.07■□□□□ 0.16
APOEP02649 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.07■□□□□ 0.16
APOEP02649 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
APOEP02649 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
APOEP02649 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.07■□□□□ 0.16
APOEP02649 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.07■□□□□ 0.16
APOEP02649 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
APOEP02649 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
APOEP02649 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.06■□□□□ 0.16
APOEP02649 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
APOEP02649 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
APOEP02649 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
APOEP02649 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.06■□□□□ 0.16
APOEP02649 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.06■□□□□ 0.16
APOEP02649 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
APOEP02649 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 ENPP7P5-201ENST00000541031 1031 ntBASIC16.06■□□□□ 0.16
APOEP02649 CR383656.12-201ENST00000549567 513 ntBASIC16.06■□□□□ 0.16
APOEP02649 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.06■□□□□ 0.16
APOEP02649 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
APOEP02649 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
APOEP02649 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 AC091951.1-201ENST00000512854 2465 ntBASIC16.05■□□□□ 0.16
APOEP02649 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
APOEP02649 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.05■□□□□ 0.16
APOEP02649 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 AL512384.1-201ENST00000406683 331 ntBASIC16.05■□□□□ 0.16
APOEP02649 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 GAPDHP21-201ENST00000450301 1010 ntBASIC16.05■□□□□ 0.16
APOEP02649 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.05■□□□□ 0.16
APOEP02649 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
APOEP02649 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
APOEP02649 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.05■□□□□ 0.16
APOEP02649 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 AL035252.4-201ENST00000624174 288 ntBASIC16.05■□□□□ 0.16
APOEP02649 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms