Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDKL5O76039 AC099063.4-201ENST00000641099 1602 ntBASIC17.8■□□□□ 0.44
CDKL5O76039 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
CDKL5O76039 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CDKL5O76039 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
CDKL5O76039 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDKL5O76039 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.79■□□□□ 0.44
CDKL5O76039 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.79■□□□□ 0.44
CDKL5O76039 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CDKL5O76039 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.79■□□□□ 0.44
CDKL5O76039 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.79■□□□□ 0.44
CDKL5O76039 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.79■□□□□ 0.44
CDKL5O76039 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.79■□□□□ 0.44
CDKL5O76039 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.79■□□□□ 0.44
CDKL5O76039 AC092552.1-201ENST00000547243 906 ntBASIC17.79■□□□□ 0.44
CDKL5O76039 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.79■□□□□ 0.44
CDKL5O76039 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.79■□□□□ 0.44
CDKL5O76039 TMEM261P1-201ENST00000604899 340 ntBASIC17.79■□□□□ 0.44
CDKL5O76039 BX539320.1-201ENST00000623759 877 ntBASIC17.79■□□□□ 0.44
CDKL5O76039 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CDKL5O76039 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDKL5O76039 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CDKL5O76039 CICP23-201ENST00000605013 2741 ntBASIC17.78■□□□□ 0.44
CDKL5O76039 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.78■□□□□ 0.44
CDKL5O76039 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.78■□□□□ 0.44
CDKL5O76039 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CDKL5O76039 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CDKL5O76039 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CDKL5O76039 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.78■□□□□ 0.44
CDKL5O76039 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.78■□□□□ 0.44
CDKL5O76039 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.78■□□□□ 0.44
CDKL5O76039 SOCS2P1-201ENST00000417727 557 ntBASIC17.78■□□□□ 0.44
CDKL5O76039 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.78■□□□□ 0.44
CDKL5O76039 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.78■□□□□ 0.44
CDKL5O76039 CICP24-201ENST00000605464 2705 ntBASIC17.78■□□□□ 0.44
CDKL5O76039 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CDKL5O76039 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.78■□□□□ 0.44
CDKL5O76039 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.78■□□□□ 0.44
CDKL5O76039 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.78■□□□□ 0.44
CDKL5O76039 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDKL5O76039 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CDKL5O76039 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.77■□□□□ 0.44
CDKL5O76039 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.77■□□□□ 0.44
CDKL5O76039 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.77■□□□□ 0.44
CDKL5O76039 MYCLP2-201ENST00000449268 967 ntBASIC17.77■□□□□ 0.44
CDKL5O76039 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.77■□□□□ 0.44
CDKL5O76039 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.77■□□□□ 0.44
CDKL5O76039 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.77■□□□□ 0.44
CDKL5O76039 AC124283.3-201ENST00000570869 594 ntBASIC17.77■□□□□ 0.44
CDKL5O76039 RN7SL204P-201ENST00000582831 262 ntBASIC17.77■□□□□ 0.44
CDKL5O76039 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CDKL5O76039 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.77■□□□□ 0.44
CDKL5O76039 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDKL5O76039 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDKL5O76039 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.77■□□□□ 0.43
CDKL5O76039 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDKL5O76039 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDKL5O76039 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDKL5O76039 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
CDKL5O76039 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDKL5O76039 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms