Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.07■□□□□ 0
VPS4BO75351 AC007967.4-201ENST00000614700 386 ntBASIC15.07■□□□□ 0
VPS4BO75351 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
VPS4BO75351 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.07■□□□□ 0
VPS4BO75351 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
VPS4BO75351 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
VPS4BO75351 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
VPS4BO75351 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.06■□□□□ 0
VPS4BO75351 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.06■□□□□ 0
VPS4BO75351 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 REXO1L2P-201ENST00000425429 2069 ntBASIC15.06■□□□□ 0
VPS4BO75351 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.06■□□□□ 0
VPS4BO75351 SPDYE17-201ENST00000412399 783 ntBASIC15.06■□□□□ 0
VPS4BO75351 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.06■□□□□ 0
VPS4BO75351 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.06■□□□□ 0
VPS4BO75351 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
VPS4BO75351 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.06■□□□□ 0
VPS4BO75351 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.06■□□□□ 0
VPS4BO75351 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.06■□□□□ 0
VPS4BO75351 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.06■□□□□ 0
VPS4BO75351 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
VPS4BO75351 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.06■□□□□ 0
VPS4BO75351 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
VPS4BO75351 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
VPS4BO75351 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.06■□□□□ 0
VPS4BO75351 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.06■□□□□ 0
VPS4BO75351 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.06■□□□□ 0
VPS4BO75351 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
VPS4BO75351 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
VPS4BO75351 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.06■□□□□ 0
VPS4BO75351 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.06■□□□□ 0
VPS4BO75351 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
VPS4BO75351 ACE3P-201ENST00000423435 1973 ntBASIC15.05■□□□□ 0
VPS4BO75351 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
VPS4BO75351 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.05■□□□□ 0
VPS4BO75351 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS4BO75351 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ 0
VPS4BO75351 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
VPS4BO75351 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.05■□□□□ 0
VPS4BO75351 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
VPS4BO75351 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS4BO75351 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.05■□□□□ 0
VPS4BO75351 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS4BO75351 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
VPS4BO75351 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.05■□□□□ 0
VPS4BO75351 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS4BO75351 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.05■□□□□ 0
VPS4BO75351 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
VPS4BO75351 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
VPS4BO75351 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
VPS4BO75351 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
VPS4BO75351 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.05■□□□□ -0
VPS4BO75351 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 AC087499.6-201ENST00000411576 835 ntBASIC15.05■□□□□ -0
VPS4BO75351 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.05■□□□□ -0
VPS4BO75351 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.05■□□□□ -0
VPS4BO75351 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.05■□□□□ -0
VPS4BO75351 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.05■□□□□ -0
VPS4BO75351 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.05■□□□□ -0
VPS4BO75351 AL162274.1-201ENST00000617191 1098 ntBASIC15.05■□□□□ -0
VPS4BO75351 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms