Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP4O75161 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 KRT17P5-201ENST00000332088 839 ntBASIC20.88■□□□□ 0.93
NPHP4O75161 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
NPHP4O75161 MIR566-201ENST00000385187 94 ntBASIC20.88■□□□□ 0.93
NPHP4O75161 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP4O75161 AC026470.1-201ENST00000478038 846 ntBASIC20.88■□□□□ 0.93
NPHP4O75161 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP4O75161 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP4O75161 SRP14-204ENST00000558720 780 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP4O75161 MIR5001-201ENST00000580185 100 ntBASIC20.88■□□□□ 0.93
NPHP4O75161 AP005264.6-204ENST00000588436 719 ntBASIC20.88■□□□□ 0.93
NPHP4O75161 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
NPHP4O75161 AC007250.1-201ENST00000608934 338 ntBASIC20.88■□□□□ 0.93
NPHP4O75161 PTPN20CP-201ENST00000614090 920 ntBASIC20.88■□□□□ 0.93
NPHP4O75161 MIR6816-201ENST00000620368 66 ntBASIC20.88■□□□□ 0.93
NPHP4O75161 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC20.88■□□□□ 0.93
NPHP4O75161 AC025183.3-201ENST00000623526 1482 ntBASIC20.88■□□□□ 0.93
NPHP4O75161 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP4O75161 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.88■□□□□ 0.93
NPHP4O75161 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
NPHP4O75161 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NPHP4O75161 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPHP4O75161 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
NPHP4O75161 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC20.87■□□□□ 0.93
NPHP4O75161 RN7SL530P-201ENST00000485097 298 ntBASIC20.87■□□□□ 0.93
NPHP4O75161 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP4O75161 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP4O75161 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP4O75161 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 ENPP7P8-202ENST00000527856 1345 ntBASIC20.87■□□□□ 0.93
NPHP4O75161 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
NPHP4O75161 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP4O75161 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP4O75161 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP4O75161 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 AC004522.1-201ENST00000419978 654 ntBASIC20.87■□□□□ 0.93
NPHP4O75161 AC108734.2-201ENST00000420887 1069 ntBASIC20.87■□□□□ 0.93
NPHP4O75161 CSNK1G2P1-201ENST00000442675 955 ntBASIC20.87■□□□□ 0.93
NPHP4O75161 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP4O75161 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 CISD2-202ENST00000503643 808 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP4O75161 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC20.87■□□□□ 0.93
NPHP4O75161 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP4O75161 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP4O75161 AC011676.5-201ENST00000624864 2660 ntBASIC20.86■□□□□ 0.93
NPHP4O75161 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.86■□□□□ 0.93
NPHP4O75161 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP4O75161 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC20.86■□□□□ 0.93
NPHP4O75161 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP4O75161 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP4O75161 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
NPHP4O75161 RBM4-207ENST00000506523 654 ntTSL 3 BASIC20.86■□□□□ 0.93
NPHP4O75161 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms