Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.1■□□□□ 0.01
TMX2-CTNND1H3BSU7 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 AC041040.2-201ENST00000622926 2899 ntBASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 AC016694.1-201ENST00000434179 700 ntBASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 CSF2RBP1-201ENST00000447905 391 ntBASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 AC007551.1-201ENST00000457394 519 ntBASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TMX2-CTNND1H3BSU7 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 AC007292.2-201ENST00000593524 1812 ntBASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 AL133338.1-201ENST00000565695 1517 ntBASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
TMX2-CTNND1H3BSU7 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 ACKR1-201ENST00000368121 1240 ntBASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 PFN1P12-201ENST00000455938 534 ntBASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.08■□□□□ 0
TMX2-CTNND1H3BSU7 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms