Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 TNRC18P2-201ENST00000417666 2714 ntBASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
VPS9D1Q9Y2B5 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 ANKRD19P-201ENST00000338192 862 ntBASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 AC004066.1-201ENST00000502488 802 ntBASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 AC093214.1-201ENST00000511688 1107 ntBASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 RFPL4AP1-201ENST00000530883 850 ntBASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 RRP7BP-205ENST00000566851 833 ntBASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 AC135178.5-201ENST00000602597 674 ntBASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 AC008738.7-201ENST00000609744 511 ntBASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 SEPT7P7-201ENST00000420492 1301 ntBASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 AC067750.1-201ENST00000608826 6545 ntBASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VPS9D1Q9Y2B5 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 PMS2P2-201ENST00000425039 1128 ntBASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 SAMD11P1-201ENST00000571429 661 ntBASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS9D1Q9Y2B5 AL391069.4-201ENST00000609583 481 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms