Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLCF1Q9UBD9 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLCF1Q9UBD9 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLCF1Q9UBD9 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLCF1Q9UBD9 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLCF1Q9UBD9 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CLCF1Q9UBD9 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.6□□□□□ -0.23
CLCF1Q9UBD9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CLCF1Q9UBD9 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CLCF1Q9UBD9 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 HLA-K-203ENST00000430151 1046 ntBASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 AC022616.1-201ENST00000518688 554 ntBASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 AC023310.1-201ENST00000554836 735 ntBASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 ECM1P1-201ENST00000604092 1279 ntBASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 AL603764.1-201ENST00000636452 321 ntBASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 AC006453.4-201ENST00000636949 1252 ntBASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 AHCYP2-201ENST00000430630 1300 ntBASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLCF1Q9UBD9 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
CLCF1Q9UBD9 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CLCF1Q9UBD9 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.58□□□□□ -0.23
CLCF1Q9UBD9 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.58□□□□□ -0.23
CLCF1Q9UBD9 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 AC010328.2-201ENST00000597698 1111 ntBASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 MIR6799-201ENST00000620297 69 ntBASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 ENPP7P14-201ENST00000621765 1040 ntBASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLCF1Q9UBD9 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms