Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.83■□□□□ 0.13
PCDH9Q9HC56 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
PCDH9Q9HC56 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
PCDH9Q9HC56 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.13
PCDH9Q9HC56 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PCDH9Q9HC56 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
PCDH9Q9HC56 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.83■□□□□ 0.13
PCDH9Q9HC56 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.83■□□□□ 0.12
PCDH9Q9HC56 AL589987.1-201ENST00000453380 819 ntBASIC15.83■□□□□ 0.12
PCDH9Q9HC56 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 AC009118.2-201ENST00000613275 655 ntBASIC15.83■□□□□ 0.12
PCDH9Q9HC56 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCDH9Q9HC56 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 MEIS3P1-201ENST00000495167 958 ntBASIC15.82■□□□□ 0.12
PCDH9Q9HC56 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 AC138969.3-201ENST00000546612 1459 ntBASIC15.82■□□□□ 0.12
PCDH9Q9HC56 AC138932.2-201ENST00000548268 1459 ntBASIC15.82■□□□□ 0.12
PCDH9Q9HC56 AC126755.4-201ENST00000549796 1459 ntBASIC15.82■□□□□ 0.12
PCDH9Q9HC56 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCDH9Q9HC56 MYO15B-237ENST00000642007 4893 ntBASIC15.82■□□□□ 0.12
PCDH9Q9HC56 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms