Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 AC104457.1-201ENST00000401024 814 ntBASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 AC241585.1-201ENST00000433527 519 ntBASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 AC008738.7-201ENST00000609744 511 ntBASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 AL158212.4-201ENST00000624062 1286 ntBASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
UPF3BQ9BZI7 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AC092337.1-201ENST00000568699 1129 ntBASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AC000095.1-201ENST00000603208 874 ntBASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AC004790.1-201ENST00000612686 536 ntBASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AC004840.1-201ENST00000636359 365 ntBASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AC012508.2-201ENST00000567613 1472 ntBASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UPF3BQ9BZI7 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 CLK3P2-201ENST00000427566 1453 ntBASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
UPF3BQ9BZI7 AC093214.1-201ENST00000511688 1107 ntBASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms