Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC138969.3-201ENST00000546612 1459 ntBASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC138932.2-201ENST00000548268 1459 ntBASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC126755.4-201ENST00000549796 1459 ntBASIC11.53□□□□□ -0.56
LINC00477Q96M19 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 COX10-202ENST00000429152 875 ntTSL 2 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC112482.1-201ENST00000492080 688 ntBASIC11.53□□□□□ -0.56
LINC00477Q96M19 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC025048.3-201ENST00000590609 569 ntBASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC025181.2-201ENST00000606994 802 ntBASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC005702.4-201ENST00000618393 416 ntBASIC11.53□□□□□ -0.56
LINC00477Q96M19 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
LINC00477Q96M19 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00477Q96M19 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00477Q96M19 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00477Q96M19 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00477Q96M19 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00477Q96M19 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC11.52□□□□□ -0.56
LINC00477Q96M19 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
LINC00477Q96M19 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00477Q96M19 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00477Q96M19 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00477Q96M19 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00477Q96M19 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00477Q96M19 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
LINC00477Q96M19 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
LINC00477Q96M19 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
LINC00477Q96M19 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AC104457.1-201ENST00000401024 814 ntBASIC11.52□□□□□ -0.57
LINC00477Q96M19 AC211486.1-202ENST00000416371 468 ntBASIC11.52□□□□□ -0.57
LINC00477Q96M19 AC074338.1-201ENST00000416825 156 ntBASIC11.52□□□□□ -0.57
LINC00477Q96M19 AC254562.1-201ENST00000417586 456 ntBASIC11.52□□□□□ -0.57
LINC00477Q96M19 HLA-V-204ENST00000476601 1289 ntBASIC11.52□□□□□ -0.57
LINC00477Q96M19 SATB1-217ENST00000493952 626 ntTSL 3 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AC211476.1-201ENST00000503899 468 ntBASIC11.52□□□□□ -0.57
LINC00477Q96M19 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AP000845.1-201ENST00000581677 2131 ntBASIC11.52□□□□□ -0.57
LINC00477Q96M19 COQ4-205ENST00000609948 956 ntTSL 2 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 LINC00552-201ENST00000625151 2579 ntBASIC11.52□□□□□ -0.57
LINC00477Q96M19 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC11.52□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms