Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
HPS3Q969F9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HPS3Q969F9 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.96■□□□□ 0.31
HPS3Q969F9 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.96■□□□□ 0.3
HPS3Q969F9 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.96■□□□□ 0.3
HPS3Q969F9 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.96■□□□□ 0.3
HPS3Q969F9 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HPS3Q969F9 AC093525.8-201ENST00000624099 1342 ntBASIC16.96■□□□□ 0.3
HPS3Q969F9 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HPS3Q969F9 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
HPS3Q969F9 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.95■□□□□ 0.3
HPS3Q969F9 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HPS3Q969F9 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
HPS3Q969F9 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.95■□□□□ 0.3
HPS3Q969F9 HLA-K-203ENST00000430151 1046 ntBASIC16.95■□□□□ 0.3
HPS3Q969F9 FAM207CP-201ENST00000443486 507 ntBASIC16.95■□□□□ 0.3
HPS3Q969F9 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.95■□□□□ 0.3
HPS3Q969F9 AC004066.1-201ENST00000502488 802 ntBASIC16.95■□□□□ 0.3
HPS3Q969F9 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.95■□□□□ 0.3
HPS3Q969F9 AC092552.1-201ENST00000547243 906 ntBASIC16.95■□□□□ 0.3
HPS3Q969F9 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.95■□□□□ 0.3
HPS3Q969F9 AC190387.1-201ENST00000551683 408 ntBASIC16.95■□□□□ 0.3
HPS3Q969F9 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 AC120045.2-201ENST00000567334 178 ntBASIC16.95■□□□□ 0.3
HPS3Q969F9 AC124283.3-201ENST00000570869 594 ntBASIC16.95■□□□□ 0.3
HPS3Q969F9 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.95■□□□□ 0.3
HPS3Q969F9 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HPS3Q969F9 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HPS3Q969F9 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.95■□□□□ 0.3
HPS3Q969F9 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HPS3Q969F9 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 AC023908.3-201ENST00000564211 3047 ntBASIC16.94■□□□□ 0.3
HPS3Q969F9 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.94■□□□□ 0.3
HPS3Q969F9 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.94■□□□□ 0.3
HPS3Q969F9 LILRP1-201ENST00000444199 1370 ntBASIC16.94■□□□□ 0.3
HPS3Q969F9 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.94■□□□□ 0.3
HPS3Q969F9 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.94■□□□□ 0.3
HPS3Q969F9 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.94■□□□□ 0.3
HPS3Q969F9 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.94■□□□□ 0.3
HPS3Q969F9 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.94■□□□□ 0.3
HPS3Q969F9 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
HPS3Q969F9 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.94■□□□□ 0.3
HPS3Q969F9 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HPS3Q969F9 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 LINC01101-201ENST00000622953 1884 ntBASIC16.94■□□□□ 0.3
HPS3Q969F9 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HPS3Q969F9 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 MTHFR-210ENST00000641407 2387 ntBASIC16.94■□□□□ 0.3
HPS3Q969F9 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.94■□□□□ 0.3
HPS3Q969F9 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.94■□□□□ 0.3
HPS3Q969F9 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.94■□□□□ 0.3
HPS3Q969F9 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HPS3Q969F9 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HPS3Q969F9 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HPS3Q969F9 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HPS3Q969F9 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HPS3Q969F9 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms