Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC018442.1-201ENST00000421439 2061 ntBASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 TUBB3P1-201ENST00000405796 1332 ntBASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ATG4AQ8WYN0 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 TSEN15P1-201ENST00000423257 515 ntBASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 DNAJB3-202ENST00000449667 1266 ntBASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 AC125807.1-201ENST00000483097 614 ntBASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ATG4AQ8WYN0 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
ATG4AQ8WYN0 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 AL645728.2-202ENST00000641679 227 ntBASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.89■□□□□ 0.13
ATG4AQ8WYN0 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms