Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SYNE3Q6ZMZ3 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SYNE3Q6ZMZ3 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 INTS4P2-202ENST00000614726 2019 ntBASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 GAPDHP40-201ENST00000505218 1006 ntBASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 SAMD11P1-201ENST00000571429 661 ntBASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 AC133539.2-201ENST00000604757 467 ntBASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 AC107373.2-201ENST00000607735 490 ntBASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 LINC02228-204ENST00000642115 2962 ntBASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.05■□□□□ 0.48
SYNE3Q6ZMZ3 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 AL138799.1-201ENST00000448213 1675 ntBASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 AC012508.2-201ENST00000567613 1472 ntBASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 AC138761.1-201ENST00000584393 385 ntBASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 AC008494.3-201ENST00000606615 944 ntBASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 AL513477.1-201ENST00000602865 2407 ntBASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE3Q6ZMZ3 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SYNE3Q6ZMZ3 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms