Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 LINC00628-201ENST00000628516 1289 ntBASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AL928921.2-201ENST00000641325 2442 ntBASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 KC6-207ENST00000600644 2311 ntTSL 3 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PPP4R4Q6NUP7 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 ST20-AS1-201ENST00000560255 4223 ntBASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 MIR193BHG-211ENST00000641433 5365 ntBASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 REXO1L1P-202ENST00000608646 1974 ntBASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PPP4R4Q6NUP7 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 SLC25A39P2-201ENST00000537614 270 ntBASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 AC008267.7-201ENST00000624570 1194 ntBASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
PPP4R4Q6NUP7 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PPP4R4Q6NUP7 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms