Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 SLC9A7P1-202ENST00000556476 2239 ntBASIC11.58□□□□□ -0.56
FOXA3P55318 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
FOXA3P55318 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC11.57□□□□□ -0.56
FOXA3P55318 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
FOXA3P55318 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
FOXA3P55318 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
FOXA3P55318 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC11.57□□□□□ -0.56
FOXA3P55318 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC11.57□□□□□ -0.56
FOXA3P55318 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC11.57□□□□□ -0.56
FOXA3P55318 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 AC061975.2-201ENST00000581722 295 ntBASIC11.57□□□□□ -0.56
FOXA3P55318 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC11.57□□□□□ -0.56
FOXA3P55318 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC11.57□□□□□ -0.56
FOXA3P55318 AC027612.1-201ENST00000445234 2395 ntBASIC11.57□□□□□ -0.56
FOXA3P55318 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC11.57□□□□□ -0.56
FOXA3P55318 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC11.57□□□□□ -0.56
FOXA3P55318 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
FOXA3P55318 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
FOXA3P55318 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
FOXA3P55318 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
FOXA3P55318 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC11.56□□□□□ -0.56
FOXA3P55318 AP001267.2-201ENST00000532619 2086 ntBASIC11.56□□□□□ -0.56
FOXA3P55318 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
FOXA3P55318 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
FOXA3P55318 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
FOXA3P55318 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC11.56□□□□□ -0.56
FOXA3P55318 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC11.56□□□□□ -0.56
FOXA3P55318 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC11.56□□□□□ -0.56
FOXA3P55318 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC11.56□□□□□ -0.56
FOXA3P55318 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC11.56□□□□□ -0.56
FOXA3P55318 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC11.56□□□□□ -0.56
FOXA3P55318 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
FOXA3P55318 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC11.56□□□□□ -0.56
FOXA3P55318 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC11.56□□□□□ -0.56
FOXA3P55318 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC11.56□□□□□ -0.56
FOXA3P55318 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
FOXA3P55318 GHSR-202ENST00000427970 912 ntBASIC11.56□□□□□ -0.56
FOXA3P55318 EEF1DP4-201ENST00000446006 880 ntBASIC11.56□□□□□ -0.56
FOXA3P55318 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC11.56□□□□□ -0.56
FOXA3P55318 PRYP6-201ENST00000514804 343 ntBASIC11.56□□□□□ -0.56
FOXA3P55318 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms