Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.96■□□□□ 0.15
CDH6P55285 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
CDH6P55285 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.96■□□□□ 0.15
CDH6P55285 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDH6P55285 OR2I1P-209ENST00000641730 5365 ntBASIC15.96■□□□□ 0.15
CDH6P55285 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CDH6P55285 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.96■□□□□ 0.14
CDH6P55285 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.96■□□□□ 0.14
CDH6P55285 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CDH6P55285 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.95■□□□□ 0.14
CDH6P55285 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
CDH6P55285 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.95■□□□□ 0.14
CDH6P55285 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
CDH6P55285 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CDH6P55285 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CDH6P55285 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
CDH6P55285 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.95■□□□□ 0.14
CDH6P55285 UGT1A2P-201ENST00000454886 866 ntBASIC15.95■□□□□ 0.14
CDH6P55285 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 AC004066.1-201ENST00000502488 802 ntBASIC15.95■□□□□ 0.14
CDH6P55285 GAPDHP40-201ENST00000505218 1006 ntBASIC15.95■□□□□ 0.14
CDH6P55285 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.95■□□□□ 0.14
CDH6P55285 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.95■□□□□ 0.14
CDH6P55285 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
CDH6P55285 SPCS2P1-201ENST00000561636 679 ntBASIC15.95■□□□□ 0.14
CDH6P55285 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.95■□□□□ 0.14
CDH6P55285 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
CDH6P55285 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.95■□□□□ 0.14
CDH6P55285 AL096865.1-201ENST00000606796 927 ntBASIC15.95■□□□□ 0.14
CDH6P55285 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.95■□□□□ 0.14
CDH6P55285 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
CDH6P55285 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDH6P55285 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
CDH6P55285 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.95■□□□□ 0.14
CDH6P55285 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
CDH6P55285 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 DRD5P1-201ENST00000456605 1438 ntBASIC15.94■□□□□ 0.14
CDH6P55285 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
CDH6P55285 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 AC099063.4-201ENST00000641099 1602 ntBASIC15.94■□□□□ 0.14
CDH6P55285 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.94■□□□□ 0.14
CDH6P55285 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
CDH6P55285 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.94■□□□□ 0.14
CDH6P55285 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.94■□□□□ 0.14
CDH6P55285 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.94■□□□□ 0.14
CDH6P55285 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
CDH6P55285 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.94■□□□□ 0.14
CDH6P55285 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.94■□□□□ 0.14
CDH6P55285 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.94■□□□□ 0.14
CDH6P55285 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.94■□□□□ 0.14
CDH6P55285 AL049840.4-201ENST00000602422 811 ntBASIC15.94■□□□□ 0.14
CDH6P55285 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.94■□□□□ 0.14
CDH6P55285 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
CDH6P55285 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.94■□□□□ 0.14
CDH6P55285 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.94■□□□□ 0.14
CDH6P55285 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.94■□□□□ 0.14
CDH6P55285 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
CDH6P55285 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH6P55285 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.94■□□□□ 0.14
CDH6P55285 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms