Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCPP55072 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCPP55072 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCPP55072 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCPP55072 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.44■□□□□ 0.22
VCPP55072 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VCPP55072 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCPP55072 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCPP55072 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCPP55072 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VCPP55072 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.43■□□□□ 0.22
VCPP55072 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VCPP55072 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VCPP55072 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.43■□□□□ 0.22
VCPP55072 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.43■□□□□ 0.22
VCPP55072 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC16.43■□□□□ 0.22
VCPP55072 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.43■□□□□ 0.22
VCPP55072 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.43■□□□□ 0.22
VCPP55072 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.43■□□□□ 0.22
VCPP55072 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.43■□□□□ 0.22
VCPP55072 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.43■□□□□ 0.22
VCPP55072 ACTG1P17-201ENST00000558391 1119 ntBASIC16.43■□□□□ 0.22
VCPP55072 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.43■□□□□ 0.22
VCPP55072 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VCPP55072 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.43■□□□□ 0.22
VCPP55072 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.43■□□□□ 0.22
VCPP55072 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
VCPP55072 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.43■□□□□ 0.22
VCPP55072 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
VCPP55072 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCPP55072 AC127383.1-201ENST00000444697 1800 ntBASIC16.42■□□□□ 0.22
VCPP55072 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.42■□□□□ 0.22
VCPP55072 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
VCPP55072 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 AC074338.1-201ENST00000416825 156 ntBASIC16.42■□□□□ 0.22
VCPP55072 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VCPP55072 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.42■□□□□ 0.22
VCPP55072 AP001258.2-201ENST00000529891 490 ntBASIC16.42■□□□□ 0.22
VCPP55072 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.42■□□□□ 0.22
VCPP55072 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.42■□□□□ 0.22
VCPP55072 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.42■□□□□ 0.22
VCPP55072 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.42■□□□□ 0.22
VCPP55072 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.42■□□□□ 0.22
VCPP55072 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCPP55072 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
VCPP55072 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.41■□□□□ 0.22
VCPP55072 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
VCPP55072 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.41■□□□□ 0.22
VCPP55072 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VCPP55072 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms