Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.48□□□□□ -0.09
RFX3P48380 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.48□□□□□ -0.09
RFX3P48380 AL009178.2-201ENST00000597278 2719 ntBASIC14.48□□□□□ -0.09
RFX3P48380 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.48□□□□□ -0.09
RFX3P48380 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.48□□□□□ -0.09
RFX3P48380 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.48□□□□□ -0.09
RFX3P48380 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.48□□□□□ -0.09
RFX3P48380 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.48□□□□□ -0.09
RFX3P48380 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.48□□□□□ -0.09
RFX3P48380 AC004890.2-204ENST00000481968 304 ntBASIC14.48□□□□□ -0.09
RFX3P48380 SPDYE18-201ENST00000510091 1050 ntBASIC14.48□□□□□ -0.09
RFX3P48380 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.48□□□□□ -0.09
RFX3P48380 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
RFX3P48380 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
RFX3P48380 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.48□□□□□ -0.09
RFX3P48380 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
RFX3P48380 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.48□□□□□ -0.09
RFX3P48380 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
RFX3P48380 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
RFX3P48380 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX3P48380 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
RFX3P48380 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 AC112693.3-201ENST00000624819 1983 ntBASIC14.47□□□□□ -0.09
RFX3P48380 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.47□□□□□ -0.09
RFX3P48380 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 AL109954.1-202ENST00000564051 2148 ntBASIC14.47□□□□□ -0.09
RFX3P48380 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.47□□□□□ -0.09
RFX3P48380 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
RFX3P48380 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
RFX3P48380 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.47□□□□□ -0.09
RFX3P48380 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.47□□□□□ -0.09
RFX3P48380 AC009477.1-201ENST00000452936 217 ntBASIC14.47□□□□□ -0.09
RFX3P48380 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 AC104794.3-201ENST00000566840 1248 ntBASIC14.47□□□□□ -0.09
RFX3P48380 AC009407.1-201ENST00000568958 598 ntBASIC14.47□□□□□ -0.09
RFX3P48380 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.47□□□□□ -0.09
RFX3P48380 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.47□□□□□ -0.09
RFX3P48380 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.47□□□□□ -0.09
RFX3P48380 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.47□□□□□ -0.09
RFX3P48380 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.47□□□□□ -0.09
RFX3P48380 CICP11-201ENST00000434745 2827 ntBASIC14.47□□□□□ -0.09
RFX3P48380 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.47□□□□□ -0.09
RFX3P48380 AC006486.2-201ENST00000624246 2199 ntBASIC14.47□□□□□ -0.09
RFX3P48380 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 AC007686.3-201ENST00000619017 3487 ntBASIC14.47□□□□□ -0.09
RFX3P48380 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms