Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.47■□□□□ 0.07
PTPN4P29074 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.47■□□□□ 0.07
PTPN4P29074 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN4P29074 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
PTPN4P29074 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.46■□□□□ 0.07
PTPN4P29074 AC127383.1-201ENST00000444697 1800 ntBASIC15.46■□□□□ 0.07
PTPN4P29074 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 MRPS18AP1-201ENST00000414458 589 ntBASIC15.46■□□□□ 0.07
PTPN4P29074 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN4P29074 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN4P29074 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.46■□□□□ 0.07
PTPN4P29074 AC005225.4-201ENST00000557330 545 ntBASIC15.46■□□□□ 0.07
PTPN4P29074 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN4P29074 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.46■□□□□ 0.07
PTPN4P29074 AC012645.4-201ENST00000610691 1061 ntBASIC15.46■□□□□ 0.07
PTPN4P29074 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN4P29074 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.46■□□□□ 0.07
PTPN4P29074 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PTPN4P29074 AL928921.2-201ENST00000641325 2442 ntBASIC15.46■□□□□ 0.07
PTPN4P29074 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PTPN4P29074 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.46■□□□□ 0.06
PTPN4P29074 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.46■□□□□ 0.06
PTPN4P29074 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.06
PTPN4P29074 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.06
PTPN4P29074 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PTPN4P29074 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PTPN4P29074 AC022144.1-201ENST00000602255 1580 ntBASIC15.45■□□□□ 0.06
PTPN4P29074 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
PTPN4P29074 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PTPN4P29074 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
PTPN4P29074 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN4P29074 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN4P29074 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
PTPN4P29074 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PTPN4P29074 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.45■□□□□ 0.06
PTPN4P29074 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN4P29074 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.45■□□□□ 0.06
PTPN4P29074 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN4P29074 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN4P29074 SERBP1P5-201ENST00000510079 1181 ntBASIC15.45■□□□□ 0.06
PTPN4P29074 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN4P29074 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN4P29074 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN4P29074 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN4P29074 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 AC027307.3-201ENST00000594262 1100 ntBASIC15.45■□□□□ 0.06
PTPN4P29074 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.45■□□□□ 0.06
PTPN4P29074 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.45■□□□□ 0.06
PTPN4P29074 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
PTPN4P29074 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN4P29074 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.45■□□□□ 0.06
PTPN4P29074 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.45■□□□□ 0.06
PTPN4P29074 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.45■□□□□ 0.06
PTPN4P29074 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.45■□□□□ 0.06
PTPN4P29074 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PTPN4P29074 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN4P29074 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN4P29074 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN4P29074 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN4P29074 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN4P29074 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
PTPN4P29074 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.44■□□□□ 0.06
PTPN4P29074 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PTPN4P29074 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms