Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 HAUS4-206ENST00000553420 473 ntTSL 210.79□□□□□ -0.685e-8■□□□□ 9.8
YBX3P16989 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC26.82■■□□□ 1.889e-10■□□□□ 9.8
YBX3P16989 DYNC1H1-203ENST00000554854 721 ntTSL 311.68□□□□□ -0.544e-7■□□□□ 9.8
YBX3P16989 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.72e-11■□□□□ 9.8
YBX3P16989 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.512e-11■□□□□ 9.8
YBX3P16989 WDR33-203ENST00000408998 583 ntTSL 425.61■■□□□ 1.693e-6■□□□□ 9.8
YBX3P16989 STARD7-202ENST00000443962 742 ntTSL 525.09■■□□□ 1.616e-10■□□□□ 9.8
YBX3P16989 BLCAP-213ENST00000467603 439 ntTSL 321.79■■□□□ 1.082e-6■□□□□ 9.8
YBX3P16989 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.922e-6■□□□□ 9.8
YBX3P16989 WDR33-205ENST00000436787 822 ntTSL 519.12■□□□□ 0.653e-6■□□□□ 9.8
YBX3P16989 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.642e-6■□□□□ 9.8
YBX3P16989 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.272e-6■□□□□ 9.8
YBX3P16989 AMFR-203ENST00000563285 486 ntTSL 216.23■□□□□ 0.196e-10■□□□□ 9.8
YBX3P16989 NDUFS5-201ENST00000372967 544 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.154e-11■□□□□ 9.8
YBX3P16989 NDUFS5-202ENST00000372969 548 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.154e-11■□□□□ 9.8
YBX3P16989 TMLHE-201ENST00000334398 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.096e-10■□□□□ 9.8
YBX3P16989 VAMP7-206ENST00000488344 696 ntTSL 215.26■□□□□ 0.036e-10■□□□□ 9.8
YBX3P16989 VAMP7-203ENST00000460621 658 ntTSL 1 (best) BASIC15.22■□□□□ 0.036e-10■□□□□ 9.8
YBX3P16989 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.143e-6■□□□□ 9.8
YBX3P16989 WDR33-204ENST00000409658 3104 ntTSL 1 (best) BASIC13.26□□□□□ -0.293e-6■□□□□ 9.8
YBX3P16989 ZFR-205ENST00000507465 1140 ntTSL 511.77□□□□□ -0.532e-8■□□□□ 9.8
YBX3P16989 ZNF770-202ENST00000559564 563 ntTSL 411.19□□□□□ -0.622e-6■□□□□ 9.8
YBX3P16989 WDR33-202ENST00000393006 3574 ntTSL 1 (best) BASIC11.08□□□□□ -0.633e-6■□□□□ 9.8
YBX3P16989 STARD7-203ENST00000462501 753 ntTSL 210.95□□□□□ -0.666e-10■□□□□ 9.8
YBX3P16989 VAMP7-205ENST00000479687 742 ntTSL 510.11□□□□□ -0.796e-10■□□□□ 9.8
YBX3P16989 TMLHE-206ENST00000487422 544 ntTSL 210.04□□□□□ -0.86e-10■□□□□ 9.8
YBX3P16989 TBC1D7-218ENST00000607208 340 ntTSL 59.69□□□□□ -0.863e-6■□□□□ 9.8
YBX3P16989 VAMP7-204ENST00000463317 673 ntTSL 59.21□□□□□ -0.946e-10■□□□□ 9.8
YBX3P16989 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.76□□□□□ -1.336e-10■□□□□ 9.8
YBX3P16989 TMLHE-205ENST00000474677 298 ntTSL 36.65□□□□□ -1.346e-10■□□□□ 9.8
YBX3P16989 STARD7-205ENST00000488084 384 ntTSL 25.3□□□□□ -1.566e-10■□□□□ 9.8
YBX3P16989 XPO5-204ENST00000424378 624 ntTSL 35.26□□□□□ -1.574e-11■□□□□ 9.8
YBX3P16989 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.055e-10■□□□□ 9.8
YBX3P16989 MRPL30-204ENST00000465432 1752 ntTSL 511.62□□□□□ -0.555e-10■□□□□ 9.8
YBX3P16989 MRPL30-201ENST00000338148 2605 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.875e-10■□□□□ 9.8
YBX3P16989 MRPL30-203ENST00000409841 1497 ntTSL 58.32□□□□□ -1.085e-10■□□□□ 9.8
YBX3P16989 NUP214-209ENST00000489260 649 ntTSL 315.53■□□□□ 0.082e-12■□□□□ 9.8
YBX3P16989 PHGDH-210ENST00000641115 1638 ntBASIC23.71■■□□□ 1.392e-7■□□□□ 9.8
YBX3P16989 PHGDH-209ENST00000641074 1780 ntBASIC21.03■□□□□ 0.962e-7■□□□□ 9.8
YBX3P16989 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.39■□□□□ 0.692e-7■□□□□ 9.8
YBX3P16989 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.32■□□□□ 0.682e-7■□□□□ 9.8
YBX3P16989 PHGDH-216ENST00000641375 2196 nt18.5■□□□□ 0.552e-7■□□□□ 9.8
YBX3P16989 PHGDH-211ENST00000641213 2053 nt18.1■□□□□ 0.492e-7■□□□□ 9.8
YBX3P16989 PHGDH-229ENST00000641891 2175 nt18.08■□□□□ 0.492e-7■□□□□ 9.8
YBX3P16989 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.24■□□□□ 0.352e-7■□□□□ 9.8
YBX3P16989 PHGDH-233ENST00000642021 2794 nt14.04□□□□□ -0.162e-7■□□□□ 9.8
YBX3P16989 TNIP1-213ENST00000522100 877 ntTSL 317.66■□□□□ 0.421e-8■□□□□ 9.8
YBX3P16989 IARS-203ENST00000395554 1103 ntTSL 517.17■□□□□ 0.349e-7■□□□□ 9.8
YBX3P16989 STAU1-208ENST00000437404 1085 ntTSL 1 (best)27.5■■□□□ 1.999e-7■□□□□ 9.8
YBX3P16989 STAU1-209ENST00000456866 643 ntTSL 514.74□□□□□ -0.059e-7■□□□□ 9.8
YBX3P16989 RACK1-231ENST00000514183 1439 ntTSL 29.04□□□□□ -0.961e-43■□□□□ 9.8
YBX3P16989 COPS6-210ENST00000496358 610 ntTSL 223.84■■□□□ 1.412e-7■□□□□ 9.8
YBX3P16989 GAS5-207ENST00000422207 643 ntTSL 27.51□□□□□ -1.215e-26■□□□□ 9.8
YBX3P16989 GAS5-217ENST00000444470 424 ntTSL 27.51□□□□□ -1.215e-26■□□□□ 9.8
YBX3P16989 GAS5-212ENST00000434796 575 ntTSL 27.41□□□□□ -1.225e-26■□□□□ 9.8
YBX3P16989 GAS5-225ENST00000454813 621 ntTSL 37.26□□□□□ -1.255e-26■□□□□ 9.8
YBX3P16989 COPG1-210ENST00000515725 3231 ntTSL 210.5□□□□□ -0.737e-7■□□□□ 9.8
YBX3P16989 COPG1-201ENST00000314797 3078 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.97e-7■□□□□ 9.8
YBX3P16989 HNRNPUL1-219ENST00000601336 754 ntTSL 224.53■■□□□ 1.526e-10■□□□□ 9.8
YBX3P16989 HNRNPUL1-218ENST00000601309 672 ntTSL 515.57■□□□□ 0.086e-10■□□□□ 9.8
YBX3P16989 HNRNPUL1-206ENST00000594207 816 ntTSL 514.99□□□□□ -0.016e-10■□□□□ 9.8
YBX3P16989 HNRNPUL1-211ENST00000597725 573 ntTSL 413.92□□□□□ -0.186e-10■□□□□ 9.8
YBX3P16989 ERGIC3-216ENST00000488384 766 ntTSL 220.8■□□□□ 0.924e-13■□□□□ 9.8
YBX3P16989 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.12e-8■□□□□ 9.8
YBX3P16989 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.072e-7■□□□□ 9.8
YBX3P16989 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.45□□□□□ -0.12e-7■□□□□ 9.8
YBX3P16989 MAP2K2-207ENST00000599021 314 ntTSL 510.87□□□□□ -0.676e-8■□□□□ 9.8
YBX3P16989 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC24.23■■□□□ 1.473e-10■□□□□ 9.8
YBX3P16989 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.55■■□□□ 1.363e-10■□□□□ 9.8
YBX3P16989 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.43■■□□□ 1.023e-10■□□□□ 9.8
YBX3P16989 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.07■□□□□ 0.483e-10■□□□□ 9.8
YBX3P16989 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.46■□□□□ 0.233e-10■□□□□ 9.8
YBX3P16989 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.37■□□□□ 0.053e-10■□□□□ 9.8
YBX3P16989 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.173e-10■□□□□ 9.8
YBX3P16989 HNRNPLL-207ENST00000425682 570 ntTSL 313.33□□□□□ -0.283e-10■□□□□ 9.8
YBX3P16989 HNRNPLL-210ENST00000488099 544 ntTSL 38.42□□□□□ -1.063e-10■□□□□ 9.8
YBX3P16989 HNRNPLL-201ENST00000272249 2190 ntTSL 26.01□□□□□ -1.453e-10■□□□□ 9.8
YBX3P16989 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.634e-9■□□□□ 9.8
YBX3P16989 RABL6-208ENST00000464941 3361 ntTSL 217.32■□□□□ 0.364e-9■□□□□ 9.8
YBX3P16989 RABL6-205ENST00000435930 3328 ntTSL 215.78■□□□□ 0.124e-9■□□□□ 9.8
YBX3P16989 EPB41-211ENST00000488277 262 ntTSL 33.77□□□□□ -1.814e-16■□□□□ 9.8
YBX3P16989 TINAGL1-207ENST00000478398 765 ntTSL 326.7■■□□□ 1.865e-6■□□□□ 9.8
YBX3P16989 TINAGL1-203ENST00000461030 820 ntTSL 525.35■■□□□ 1.655e-6■□□□□ 9.8
YBX3P16989 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.35e-6■□□□□ 9.8
YBX3P16989 LRP10-202ENST00000470660 486 ntTSL 321.92■■□□□ 1.15e-6■□□□□ 9.8
YBX3P16989 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.945e-6■□□□□ 9.8
YBX3P16989 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.95e-6■□□□□ 9.8
YBX3P16989 TINAGL1-204ENST00000463112 3075 ntTSL 217.51■□□□□ 0.395e-6■□□□□ 9.8
YBX3P16989 TINAGL1-210ENST00000498429 904 ntTSL 316.68■□□□□ 0.265e-6■□□□□ 9.8
YBX3P16989 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.25e-6■□□□□ 9.8
YBX3P16989 TINAGL1-209ENST00000481165 4759 ntTSL 216.27■□□□□ 0.25e-6■□□□□ 9.8
YBX3P16989 LRP1-211ENST00000556356 5114 ntTSL 215.9■□□□□ 0.147e-7■□□□□ 9.8
YBX3P16989 TINAGL1-206ENST00000468635 827 ntTSL 515.1■□□□□ 0.015e-6■□□□□ 9.8
YBX3P16989 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.77□□□□□ -0.045e-6■□□□□ 9.8
YBX3P16989 H6PD-202ENST00000495451 2701 ntTSL 212.72□□□□□ -0.375e-6■□□□□ 9.8
YBX3P16989 MPZL1-205ENST00000448405 1596 ntTSL 1 (best)28.75■■■□□ 2.192e-7■□□□□ 9.8
YBX3P16989 AES-209ENST00000587393 1082 ntTSL 219.74■□□□□ 0.759e-16■□□□□ 9.8
YBX3P16989 ZPR1-204ENST00000429220 2364 ntTSL 517.8■□□□□ 0.446e-7■□□□□ 9.8
YBX3P16989 ZPR1-206ENST00000444935 2497 ntTSL 512.68□□□□□ -0.386e-7■□□□□ 9.8
YBX3P16989 ZPR1-201ENST00000227322 6566 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.596e-7■□□□□ 9.8
Retrieved 100 of 29,075 protein–RNA pairs in 241.3 ms