Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
GGPS1O95749 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
GGPS1O95749 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 AL133338.1-201ENST00000565695 1517 ntBASIC17.12■□□□□ 0.33
GGPS1O95749 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.12■□□□□ 0.33
GGPS1O95749 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.12■□□□□ 0.33
GGPS1O95749 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.12■□□□□ 0.33
GGPS1O95749 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.12■□□□□ 0.33
GGPS1O95749 AC007969.1-201ENST00000433675 447 ntBASIC17.12■□□□□ 0.33
GGPS1O95749 FAM8A4P-201ENST00000435433 1213 ntBASIC17.12■□□□□ 0.33
GGPS1O95749 MTX1P1-201ENST00000440904 838 ntBASIC17.12■□□□□ 0.33
GGPS1O95749 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 ZNF767P-206ENST00000513792 565 ntBASIC17.12■□□□□ 0.33
GGPS1O95749 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.12■□□□□ 0.33
GGPS1O95749 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC17.12■□□□□ 0.33
GGPS1O95749 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
GGPS1O95749 C2orf69P2-201ENST00000562032 1123 ntBASIC17.12■□□□□ 0.33
GGPS1O95749 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.12■□□□□ 0.33
GGPS1O95749 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.12■□□□□ 0.33
GGPS1O95749 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
GGPS1O95749 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.12■□□□□ 0.33
GGPS1O95749 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.12■□□□□ 0.33
GGPS1O95749 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.12■□□□□ 0.33
GGPS1O95749 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
GGPS1O95749 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
GGPS1O95749 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.11■□□□□ 0.33
GGPS1O95749 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
GGPS1O95749 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
GGPS1O95749 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.11■□□□□ 0.33
GGPS1O95749 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.11■□□□□ 0.33
GGPS1O95749 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 MIR1247-201ENST00000408206 136 ntBASIC17.11■□□□□ 0.33
GGPS1O95749 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.11■□□□□ 0.33
GGPS1O95749 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.11■□□□□ 0.33
GGPS1O95749 POM121L8P-201ENST00000417732 1281 ntBASIC17.11■□□□□ 0.33
GGPS1O95749 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.11■□□□□ 0.33
GGPS1O95749 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.11■□□□□ 0.33
GGPS1O95749 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 POM121L9P-203ENST00000441984 1285 ntBASIC17.11■□□□□ 0.33
GGPS1O95749 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.11■□□□□ 0.33
GGPS1O95749 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.11■□□□□ 0.33
GGPS1O95749 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.11■□□□□ 0.33
GGPS1O95749 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.11■□□□□ 0.33
GGPS1O95749 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
GGPS1O95749 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.11■□□□□ 0.33
GGPS1O95749 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
GGPS1O95749 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.11■□□□□ 0.33
GGPS1O95749 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.11■□□□□ 0.33
GGPS1O95749 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 AC015818.8-201ENST00000587907 1519 ntBASIC17.11■□□□□ 0.33
GGPS1O95749 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GGPS1O95749 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
GGPS1O95749 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms