Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COMMD3Q9UBI1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COMMD3Q9UBI1 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COMMD3Q9UBI1 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 AC021231.2-201ENST00000594613 730 ntBASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 C1orf229-201ENST00000623686 2258 ntBASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COMMD3Q9UBI1 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COMMD3Q9UBI1 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 AC008813.1-201ENST00000536597 885 ntBASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 AC148477.6-201ENST00000623746 465 ntBASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 LINC00526-201ENST00000581067 1875 ntBASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 AC087741.3-201ENST00000624270 1347 ntBASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COMMD3Q9UBI1 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3Q9UBI1 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3Q9UBI1 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.19■□□□□ 0.82
COMMD3Q9UBI1 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3Q9UBI1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.19■□□□□ 0.82
COMMD3Q9UBI1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3Q9UBI1 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3Q9UBI1 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3Q9UBI1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3Q9UBI1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.18■□□□□ 0.82
COMMD3Q9UBI1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3Q9UBI1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3Q9UBI1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.18■□□□□ 0.82
COMMD3Q9UBI1 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3Q9UBI1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3Q9UBI1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
COMMD3Q9UBI1 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COMMD3Q9UBI1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COMMD3Q9UBI1 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms