Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.61■□□□□ 0.89
CLCF1Q9UBD9 AC131274.2-201ENST00000580697 1507 ntBASIC20.61■□□□□ 0.89
CLCF1Q9UBD9 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLCF1Q9UBD9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLCF1Q9UBD9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLCF1Q9UBD9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CLCF1Q9UBD9 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLCF1Q9UBD9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLCF1Q9UBD9 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLCF1Q9UBD9 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLCF1Q9UBD9 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLCF1Q9UBD9 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CLCF1Q9UBD9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.58■□□□□ 0.89
CLCF1Q9UBD9 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
CLCF1Q9UBD9 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CLCF1Q9UBD9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CLCF1Q9UBD9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 AL512631.2-201ENST00000604634 923 ntBASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLCF1Q9UBD9 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.55■□□□□ 0.88
CLCF1Q9UBD9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLCF1Q9UBD9 AL136116.3-201ENST00000402907 1138 ntBASIC20.54■□□□□ 0.88
CLCF1Q9UBD9 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.54■□□□□ 0.88
CLCF1Q9UBD9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLCF1Q9UBD9 MIR4466-201ENST00000606121 54 ntBASIC20.54■□□□□ 0.88
CLCF1Q9UBD9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.54■□□□□ 0.88
CLCF1Q9UBD9 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.54■□□□□ 0.88
CLCF1Q9UBD9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLCF1Q9UBD9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 AL022069.1-201ENST00000568025 1636 ntBASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLCF1Q9UBD9 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLCF1Q9UBD9 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CLCF1Q9UBD9 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms