Protein–RNA interactions for Protein: Q9NRR5

UBQLN4, Ubiquilin-4, humanhuman

Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4Q9NRR5 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.25■□□□□ 0.99
UBQLN4Q9NRR5 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.25■□□□□ 0.99
UBQLN4Q9NRR5 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBQLN4Q9NRR5 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBQLN4Q9NRR5 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UBQLN4Q9NRR5 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
UBQLN4Q9NRR5 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
UBQLN4Q9NRR5 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
UBQLN4Q9NRR5 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBQLN4Q9NRR5 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.23■□□□□ 0.99
UBQLN4Q9NRR5 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBQLN4Q9NRR5 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
UBQLN4Q9NRR5 AL022069.1-201ENST00000568025 1636 ntBASIC21.22■□□□□ 0.99
UBQLN4Q9NRR5 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBQLN4Q9NRR5 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.22■□□□□ 0.99
UBQLN4Q9NRR5 RARRES2P1-201ENST00000474487 481 ntBASIC21.22■□□□□ 0.99
UBQLN4Q9NRR5 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
UBQLN4Q9NRR5 AF131216.4-201ENST00000638924 1588 ntBASIC21.22■□□□□ 0.99
UBQLN4Q9NRR5 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBQLN4Q9NRR5 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBQLN4Q9NRR5 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UBQLN4Q9NRR5 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.21■□□□□ 0.99
UBQLN4Q9NRR5 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UBQLN4Q9NRR5 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.21■□□□□ 0.99
UBQLN4Q9NRR5 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBQLN4Q9NRR5 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
UBQLN4Q9NRR5 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
UBQLN4Q9NRR5 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.2■□□□□ 0.98
UBQLN4Q9NRR5 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBQLN4Q9NRR5 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.2■□□□□ 0.98
UBQLN4Q9NRR5 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
UBQLN4Q9NRR5 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.2■□□□□ 0.98
UBQLN4Q9NRR5 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.2■□□□□ 0.98
UBQLN4Q9NRR5 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN4Q9NRR5 AC004812.2-201ENST00000611079 2094 ntBASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 AC137630.3-201ENST00000607245 391 ntBASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.18■□□□□ 0.98
UBQLN4Q9NRR5 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBQLN4Q9NRR5 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UBQLN4Q9NRR5 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.17■□□□□ 0.98
UBQLN4Q9NRR5 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBQLN4Q9NRR5 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBQLN4Q9NRR5 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
UBQLN4Q9NRR5 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBQLN4Q9NRR5 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBQLN4Q9NRR5 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 AC131274.2-201ENST00000580697 1507 ntBASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.16■□□□□ 0.98
UBQLN4Q9NRR5 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
UBQLN4Q9NRR5 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
UBQLN4Q9NRR5 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBQLN4Q9NRR5 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.15■□□□□ 0.98
UBQLN4Q9NRR5 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.15■□□□□ 0.98
UBQLN4Q9NRR5 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UBQLN4Q9NRR5 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UBQLN4Q9NRR5 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
UBQLN4Q9NRR5 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBQLN4Q9NRR5 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
UBQLN4Q9NRR5 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
UBQLN4Q9NRR5 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
UBQLN4Q9NRR5 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
UBQLN4Q9NRR5 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms