Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
RPAP1Q9BWH6 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RPAP1Q9BWH6 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RPAP1Q9BWH6 MIR3621-201ENST00000580529 85 ntBASIC28.18■■■□□ 2.1
RPAP1Q9BWH6 AC010997.5-201ENST00000609182 354 ntBASIC28.18■■■□□ 2.1
RPAP1Q9BWH6 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
RPAP1Q9BWH6 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RPAP1Q9BWH6 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
RPAP1Q9BWH6 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RPAP1Q9BWH6 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
RPAP1Q9BWH6 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC28.17■■■□□ 2.1
RPAP1Q9BWH6 SRR-208ENST00000576848 588 ntTSL 4 BASIC28.17■■■□□ 2.1
RPAP1Q9BWH6 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
RPAP1Q9BWH6 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RPAP1Q9BWH6 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC28.17■■■□□ 2.1
RPAP1Q9BWH6 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
RPAP1Q9BWH6 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
RPAP1Q9BWH6 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RPAP1Q9BWH6 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RPAP1Q9BWH6 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
RPAP1Q9BWH6 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC28.16■■■□□ 2.1
RPAP1Q9BWH6 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RPAP1Q9BWH6 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
RPAP1Q9BWH6 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RPAP1Q9BWH6 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
RPAP1Q9BWH6 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC28.16■■■□□ 2.1
RPAP1Q9BWH6 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC28.16■■■□□ 2.1
RPAP1Q9BWH6 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC28.15■■■□□ 2.1
RPAP1Q9BWH6 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RPAP1Q9BWH6 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RPAP1Q9BWH6 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RPAP1Q9BWH6 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RPAP1Q9BWH6 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC28.15■■■□□ 2.1
RPAP1Q9BWH6 LSM4-201ENST00000252816 986 ntTSL 2 BASIC28.14■■■□□ 2.1
RPAP1Q9BWH6 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RPAP1Q9BWH6 AL139246.5-201ENST00000606645 996 ntBASIC28.14■■■□□ 2.1
RPAP1Q9BWH6 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
RPAP1Q9BWH6 PREB-202ENST00000406567 1910 ntTSL 5 BASIC28.14■■■□□ 2.1
RPAP1Q9BWH6 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
RPAP1Q9BWH6 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.09
RPAP1Q9BWH6 AL139125.2-201ENST00000623134 1869 ntBASIC28.13■■■□□ 2.09
RPAP1Q9BWH6 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC28.13■■■□□ 2.09
RPAP1Q9BWH6 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
RPAP1Q9BWH6 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RPAP1Q9BWH6 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC28.12■■■□□ 2.09
RPAP1Q9BWH6 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC28.12■■■□□ 2.09
RPAP1Q9BWH6 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC28.12■■■□□ 2.09
RPAP1Q9BWH6 TK2-202ENST00000417693 1046 ntTSL 2 BASIC28.12■■■□□ 2.09
RPAP1Q9BWH6 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC28.12■■■□□ 2.09
RPAP1Q9BWH6 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC28.12■■■□□ 2.09
RPAP1Q9BWH6 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
RPAP1Q9BWH6 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 EXOG-217ENST00000630638 197 ntTSL 5 BASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 AL136116.3-201ENST00000402907 1138 ntBASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC28.11■■■□□ 2.09
RPAP1Q9BWH6 AF131216.4-201ENST00000638924 1588 ntBASIC28.1■■■□□ 2.09
RPAP1Q9BWH6 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC28.1■■■□□ 2.09
RPAP1Q9BWH6 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RPAP1Q9BWH6 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RPAP1Q9BWH6 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC28.1■■■□□ 2.09
RPAP1Q9BWH6 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
RPAP1Q9BWH6 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC28.1■■■□□ 2.09
RPAP1Q9BWH6 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RPAP1Q9BWH6 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC28.09■■■□□ 2.09
RPAP1Q9BWH6 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RPAP1Q9BWH6 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
RPAP1Q9BWH6 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
RPAP1Q9BWH6 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
RPAP1Q9BWH6 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
RPAP1Q9BWH6 MIR6089-201ENST00000616698 64 ntBASIC28.08■■■□□ 2.09
RPAP1Q9BWH6 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC28.08■■■□□ 2.09
RPAP1Q9BWH6 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC28.08■■■□□ 2.09
RPAP1Q9BWH6 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 MIR935-201ENST00000401179 91 ntBASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 NALT1-201ENST00000429224 738 ntTSL 5 BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
RPAP1Q9BWH6 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC28.06■■■□□ 2.08
RPAP1Q9BWH6 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
RPAP1Q9BWH6 AL512631.2-201ENST00000604634 923 ntBASIC28.06■■■□□ 2.08
RPAP1Q9BWH6 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
RPAP1Q9BWH6 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC28.06■■■□□ 2.08
RPAP1Q9BWH6 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms