Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC27.85■■■□□ 2.05
SMC1BQ8NDV3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SMC1BQ8NDV3 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC27.84■■■□□ 2.05
SMC1BQ8NDV3 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.05
SMC1BQ8NDV3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
SMC1BQ8NDV3 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC27.84■■■□□ 2.05
SMC1BQ8NDV3 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.84■■■□□ 2.05
SMC1BQ8NDV3 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
SMC1BQ8NDV3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
SMC1BQ8NDV3 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SMC1BQ8NDV3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
SMC1BQ8NDV3 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
SMC1BQ8NDV3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
SMC1BQ8NDV3 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
SMC1BQ8NDV3 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.83■■■□□ 2.05
SMC1BQ8NDV3 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SMC1BQ8NDV3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SMC1BQ8NDV3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SMC1BQ8NDV3 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC27.82■■■□□ 2.04
SMC1BQ8NDV3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.82■■■□□ 2.04
SMC1BQ8NDV3 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SMC1BQ8NDV3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SMC1BQ8NDV3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SMC1BQ8NDV3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC27.81■■■□□ 2.04
SMC1BQ8NDV3 AC027612.3-201ENST00000413684 1047 ntBASIC27.81■■■□□ 2.04
SMC1BQ8NDV3 NTF6G-201ENST00000591094 616 ntBASIC27.81■■■□□ 2.04
SMC1BQ8NDV3 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC27.81■■■□□ 2.04
SMC1BQ8NDV3 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SMC1BQ8NDV3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC27.81■■■□□ 2.04
SMC1BQ8NDV3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
SMC1BQ8NDV3 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SMC1BQ8NDV3 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SMC1BQ8NDV3 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
SMC1BQ8NDV3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SMC1BQ8NDV3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC27.8■■■□□ 2.04
SMC1BQ8NDV3 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SMC1BQ8NDV3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SMC1BQ8NDV3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC27.8■■■□□ 2.04
SMC1BQ8NDV3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC27.8■■■□□ 2.04
SMC1BQ8NDV3 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC27.79■■■□□ 2.04
SMC1BQ8NDV3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
SMC1BQ8NDV3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
SMC1BQ8NDV3 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC27.79■■■□□ 2.04
SMC1BQ8NDV3 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC27.79■■■□□ 2.04
SMC1BQ8NDV3 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC27.79■■■□□ 2.04
SMC1BQ8NDV3 GXYLT1P5-201ENST00000614548 1189 ntBASIC27.79■■■□□ 2.04
SMC1BQ8NDV3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SMC1BQ8NDV3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 AC090877.2-201ENST00000558441 1738 ntBASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
SMC1BQ8NDV3 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SMC1BQ8NDV3 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
SMC1BQ8NDV3 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC27.77■■■□□ 2.04
SMC1BQ8NDV3 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC27.77■■■□□ 2.04
SMC1BQ8NDV3 AL358852.1-201ENST00000623174 1268 ntBASIC27.77■■■□□ 2.04
SMC1BQ8NDV3 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
SMC1BQ8NDV3 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
SMC1BQ8NDV3 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
SMC1BQ8NDV3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
SMC1BQ8NDV3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SMC1BQ8NDV3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC27.76■■■□□ 2.03
SMC1BQ8NDV3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC27.76■■■□□ 2.03
SMC1BQ8NDV3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC27.76■■■□□ 2.03
SMC1BQ8NDV3 FOXO3B-201ENST00000395675 1928 ntBASIC27.76■■■□□ 2.03
SMC1BQ8NDV3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
SMC1BQ8NDV3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC27.75■■■□□ 2.03
SMC1BQ8NDV3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC27.75■■■□□ 2.03
SMC1BQ8NDV3 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
SMC1BQ8NDV3 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SMC1BQ8NDV3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC27.74■■■□□ 2.03
SMC1BQ8NDV3 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC27.74■■■□□ 2.03
SMC1BQ8NDV3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SMC1BQ8NDV3 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC27.74■■■□□ 2.03
SMC1BQ8NDV3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC27.74■■■□□ 2.03
SMC1BQ8NDV3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SMC1BQ8NDV3 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SMC1BQ8NDV3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 AC080038.1-201ENST00000611274 1154 ntBASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC27.73■■■□□ 2.03
SMC1BQ8NDV3 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SMC1BQ8NDV3 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC27.72■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms