Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN3Q8NCR9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CLRN3Q8NCR9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.54
CLRN3Q8NCR9 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CLRN3Q8NCR9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CLRN3Q8NCR9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN3Q8NCR9 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN3Q8NCR9 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN3Q8NCR9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.44■□□□□ 0.54
CLRN3Q8NCR9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLRN3Q8NCR9 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLRN3Q8NCR9 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.41■□□□□ 0.54
CLRN3Q8NCR9 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 AC007952.6-201ENST00000573168 2673 ntBASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 AC003957.1-201ENST00000625108 2673 ntBASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLRN3Q8NCR9 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLRN3Q8NCR9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLRN3Q8NCR9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLRN3Q8NCR9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms