Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZIC4Q8N9L1 AL035685.1-201ENST00000636663 812 ntBASIC20.53■□□□□ 0.88
ZIC4Q8N9L1 AC021242.3-201ENST00000607598 1377 ntBASIC20.53■□□□□ 0.88
ZIC4Q8N9L1 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZIC4Q8N9L1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.53■□□□□ 0.88
ZIC4Q8N9L1 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.53■□□□□ 0.88
ZIC4Q8N9L1 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZIC4Q8N9L1 AC131274.2-201ENST00000580697 1507 ntBASIC20.53■□□□□ 0.88
ZIC4Q8N9L1 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ZIC4Q8N9L1 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZIC4Q8N9L1 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.52■□□□□ 0.88
ZIC4Q8N9L1 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZIC4Q8N9L1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZIC4Q8N9L1 Z92544.1-202ENST00000571933 1220 ntBASIC20.52■□□□□ 0.88
ZIC4Q8N9L1 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZIC4Q8N9L1 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZIC4Q8N9L1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.52■□□□□ 0.88
ZIC4Q8N9L1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
ZIC4Q8N9L1 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 BX664725.1-201ENST00000438252 379 ntBASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 AC141586.4-201ENST00000624558 1573 ntBASIC20.51■□□□□ 0.87
ZIC4Q8N9L1 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZIC4Q8N9L1 AC239859.2-201ENST00000444165 318 ntBASIC20.5■□□□□ 0.87
ZIC4Q8N9L1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.5■□□□□ 0.87
ZIC4Q8N9L1 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.5■□□□□ 0.87
ZIC4Q8N9L1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.5■□□□□ 0.87
ZIC4Q8N9L1 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.5■□□□□ 0.87
ZIC4Q8N9L1 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.5■□□□□ 0.87
ZIC4Q8N9L1 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZIC4Q8N9L1 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
ZIC4Q8N9L1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
ZIC4Q8N9L1 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZIC4Q8N9L1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
ZIC4Q8N9L1 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZIC4Q8N9L1 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.49■□□□□ 0.87
ZIC4Q8N9L1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.49■□□□□ 0.87
ZIC4Q8N9L1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZIC4Q8N9L1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZIC4Q8N9L1 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZIC4Q8N9L1 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
ZIC4Q8N9L1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZIC4Q8N9L1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
ZIC4Q8N9L1 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZIC4Q8N9L1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
ZIC4Q8N9L1 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
ZIC4Q8N9L1 AL022069.1-201ENST00000568025 1636 ntBASIC20.48■□□□□ 0.87
ZIC4Q8N9L1 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ZIC4Q8N9L1 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZIC4Q8N9L1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.47■□□□□ 0.87
ZIC4Q8N9L1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZIC4Q8N9L1 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZIC4Q8N9L1 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.47■□□□□ 0.87
ZIC4Q8N9L1 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
ZIC4Q8N9L1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.47■□□□□ 0.87
ZIC4Q8N9L1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZIC4Q8N9L1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.47■□□□□ 0.87
ZIC4Q8N9L1 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZIC4Q8N9L1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZIC4Q8N9L1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.46■□□□□ 0.87
ZIC4Q8N9L1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.46■□□□□ 0.87
ZIC4Q8N9L1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.46■□□□□ 0.87
ZIC4Q8N9L1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.46■□□□□ 0.87
ZIC4Q8N9L1 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZIC4Q8N9L1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 AC004448.1-201ENST00000458332 883 ntBASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 KRT125P-201ENST00000546827 989 ntBASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 MIR4787-201ENST00000607364 84 ntBASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZIC4Q8N9L1 AL161729.1-201ENST00000604104 1402 ntBASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 SNX5-217ENST00000606557 1087 ntBASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 AC093323.1-202ENST00000635031 2045 ntBASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 AC004812.2-201ENST00000611079 2094 ntBASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZIC4Q8N9L1 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.43■□□□□ 0.86
ZIC4Q8N9L1 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.43■□□□□ 0.86
ZIC4Q8N9L1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.43■□□□□ 0.86
ZIC4Q8N9L1 AC092028.1-203ENST00000608262 953 ntBASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms