Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC65Q8IXS2 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.65■■□□□ 1.7
CCDC65Q8IXS2 MIR4281-201ENST00000580852 62 ntBASIC25.65■■□□□ 1.7
CCDC65Q8IXS2 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC25.65■■□□□ 1.7
CCDC65Q8IXS2 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.64■■□□□ 1.7
CCDC65Q8IXS2 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CCDC65Q8IXS2 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.7
CCDC65Q8IXS2 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC25.64■■□□□ 1.69
CCDC65Q8IXS2 AC004812.2-201ENST00000611079 2094 ntBASIC25.64■■□□□ 1.69
CCDC65Q8IXS2 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 AC103724.3-201ENST00000564481 992 ntBASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC65Q8IXS2 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC65Q8IXS2 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC65Q8IXS2 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC65Q8IXS2 SHD-204ENST00000599689 1729 ntTSL 5 BASIC25.62■■□□□ 1.69
CCDC65Q8IXS2 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC65Q8IXS2 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC65Q8IXS2 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC65Q8IXS2 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC65Q8IXS2 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC65Q8IXS2 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC65Q8IXS2 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC65Q8IXS2 AL161729.1-201ENST00000604104 1402 ntBASIC25.61■■□□□ 1.69
CCDC65Q8IXS2 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC65Q8IXS2 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC65Q8IXS2 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC65Q8IXS2 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.6■■□□□ 1.69
CCDC65Q8IXS2 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC65Q8IXS2 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.6■■□□□ 1.69
CCDC65Q8IXS2 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC65Q8IXS2 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 AL022069.1-201ENST00000568025 1636 ntBASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
CCDC65Q8IXS2 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.58■■□□□ 1.69
CCDC65Q8IXS2 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC65Q8IXS2 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC65Q8IXS2 AF131216.4-201ENST00000638924 1588 ntBASIC25.56■■□□□ 1.68
CCDC65Q8IXS2 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.56■■□□□ 1.68
CCDC65Q8IXS2 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC25.56■■□□□ 1.68
CCDC65Q8IXS2 TK2-216ENST00000564917 1156 ntTSL 3 BASIC25.56■■□□□ 1.68
CCDC65Q8IXS2 AL031848.2-201ENST00000607670 837 ntBASIC25.56■■□□□ 1.68
CCDC65Q8IXS2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
CCDC65Q8IXS2 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.55■■□□□ 1.68
CCDC65Q8IXS2 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
CCDC65Q8IXS2 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC65Q8IXS2 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC65Q8IXS2 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC65Q8IXS2 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC65Q8IXS2 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.54■■□□□ 1.68
CCDC65Q8IXS2 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.54■■□□□ 1.68
CCDC65Q8IXS2 AC131274.2-201ENST00000580697 1507 ntBASIC25.53■■□□□ 1.68
CCDC65Q8IXS2 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC65Q8IXS2 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC65Q8IXS2 ABCB10P4-201ENST00000566803 2184 ntBASIC25.52■■□□□ 1.68
CCDC65Q8IXS2 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC65Q8IXS2 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC65Q8IXS2 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC65Q8IXS2 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC25.52■■□□□ 1.68
CCDC65Q8IXS2 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC65Q8IXS2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms