Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC29.68■■■□□ 2.34
COL5A3P25940 HYI-206ENST00000372434 1025 ntTSL 5 BASIC29.68■■■□□ 2.34
COL5A3P25940 SERBP1P1-201ENST00000396021 1160 ntBASIC29.68■■■□□ 2.34
COL5A3P25940 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
COL5A3P25940 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
COL5A3P25940 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC29.68■■■□□ 2.34
COL5A3P25940 AC011298.3-201ENST00000615796 283 ntBASIC29.68■■■□□ 2.34
COL5A3P25940 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
COL5A3P25940 AC027682.1-201ENST00000562846 899 ntBASIC29.67■■■□□ 2.34
COL5A3P25940 MAG-206ENST00000597035 542 ntTSL 4 BASIC29.67■■■□□ 2.34
COL5A3P25940 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC29.66■■■□□ 2.34
COL5A3P25940 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC29.66■■■□□ 2.34
COL5A3P25940 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
COL5A3P25940 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC29.66■■■□□ 2.34
COL5A3P25940 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
COL5A3P25940 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
COL5A3P25940 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
COL5A3P25940 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
COL5A3P25940 STOX2-205ENST00000513034 807 ntTSL 3 BASIC29.65■■■□□ 2.34
COL5A3P25940 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC29.65■■■□□ 2.34
COL5A3P25940 AC087623.3-201ENST00000607047 1098 ntBASIC29.65■■■□□ 2.34
COL5A3P25940 CA15P2-201ENST00000611168 834 ntBASIC29.65■■■□□ 2.34
COL5A3P25940 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC29.65■■■□□ 2.34
COL5A3P25940 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC29.65■■■□□ 2.34
COL5A3P25940 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC29.65■■■□□ 2.34
COL5A3P25940 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC29.65■■■□□ 2.34
COL5A3P25940 PLD4-205ENST00000553861 667 ntTSL 2 BASIC29.65■■■□□ 2.34
COL5A3P25940 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC29.64■■■□□ 2.34
COL5A3P25940 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
COL5A3P25940 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC29.64■■■□□ 2.34
COL5A3P25940 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC29.64■■■□□ 2.34
COL5A3P25940 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC29.64■■■□□ 2.34
COL5A3P25940 RASA4CP-201ENST00000424092 1398 ntBASIC29.64■■■□□ 2.33
COL5A3P25940 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
COL5A3P25940 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
COL5A3P25940 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC29.63■■■□□ 2.33
COL5A3P25940 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
COL5A3P25940 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
COL5A3P25940 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
COL5A3P25940 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
COL5A3P25940 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
COL5A3P25940 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
COL5A3P25940 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
COL5A3P25940 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC29.62■■■□□ 2.33
COL5A3P25940 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
COL5A3P25940 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
COL5A3P25940 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC29.61■■■□□ 2.33
COL5A3P25940 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
COL5A3P25940 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
COL5A3P25940 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC29.61■■■□□ 2.33
COL5A3P25940 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
COL5A3P25940 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
COL5A3P25940 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
COL5A3P25940 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
COL5A3P25940 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC29.61■■■□□ 2.33
COL5A3P25940 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
COL5A3P25940 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
COL5A3P25940 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC29.6■■■□□ 2.33
COL5A3P25940 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
COL5A3P25940 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC29.6■■■□□ 2.33
COL5A3P25940 C17orf82-201ENST00000623772 1530 ntBASIC29.6■■■□□ 2.33
COL5A3P25940 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC29.6■■■□□ 2.33
COL5A3P25940 SYT6-210ENST00000641643 1587 ntBASIC29.6■■■□□ 2.33
COL5A3P25940 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
COL5A3P25940 PKM-203ENST00000389093 2279 ntTSL 5 BASIC29.6■■■□□ 2.33
COL5A3P25940 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC29.59■■■□□ 2.33
COL5A3P25940 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC29.59■■■□□ 2.33
COL5A3P25940 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
COL5A3P25940 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
COL5A3P25940 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
COL5A3P25940 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC29.59■■■□□ 2.33
COL5A3P25940 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
COL5A3P25940 RBM38-205ENST00000440234 686 ntTSL 2 BASIC29.59■■■□□ 2.33
COL5A3P25940 AL162430.1-201ENST00000480705 870 ntBASIC29.59■■■□□ 2.33
COL5A3P25940 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC29.58■■■□□ 2.33
COL5A3P25940 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
COL5A3P25940 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC29.58■■■□□ 2.33
COL5A3P25940 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
COL5A3P25940 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL5A3P25940 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL5A3P25940 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL5A3P25940 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL5A3P25940 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC29.57■■■□□ 2.32
COL5A3P25940 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC29.57■■■□□ 2.32
COL5A3P25940 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
COL5A3P25940 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
COL5A3P25940 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
COL5A3P25940 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC29.57■■■□□ 2.32
COL5A3P25940 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
COL5A3P25940 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
COL5A3P25940 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC29.56■■■□□ 2.32
COL5A3P25940 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
COL5A3P25940 AC099791.2-201ENST00000605725 427 ntBASIC29.56■■■□□ 2.32
COL5A3P25940 MIR6089-201ENST00000616698 64 ntBASIC29.56■■■□□ 2.32
COL5A3P25940 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC29.55■■■□□ 2.32
COL5A3P25940 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC29.55■■■□□ 2.32
COL5A3P25940 SHF-206ENST00000560471 2499 ntTSL 5 BASIC29.54■■■□□ 2.32
COL5A3P25940 AC099791.1-201ENST00000416440 715 ntBASIC29.54■■■□□ 2.32
COL5A3P25940 RHOF-204ENST00000537265 699 ntTSL 2 BASIC29.54■■■□□ 2.32
COL5A3P25940 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC29.54■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms